<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-9401" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2017-12-06</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-09-12</deposition>
            <header_release>2017-10-11</header_release>
            <map_release>2017-10-11</map_release>
            <update>2017-12-06</update>
        </key_dates>
        <title>CH505 SOSIP.664 trimer in complex with DH522.2 Fab</title>
        <authors_list>
            <author>Fera D</author>
            <author>Harrison SC</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Williams WB</author>
                    <author order="2">Zhang J</author>
                    <author order="3">Jiang C</author>
                    <author order="4">Nicely NI</author>
                    <author order="5">Fera D</author>
                    <author order="6">Luo K</author>
                    <author order="7">Moody MA</author>
                    <author order="8">Liao HX</author>
                    <author order="9">Alam SM</author>
                    <author order="10">Kepler TB</author>
                    <author order="11">Ramesh A</author>
                    <author order="12">Wiehe K</author>
                    <author order="13">Holland JA</author>
                    <author order="14">Bradley T</author>
                    <author order="15">Vandergrift N</author>
                    <author order="16">Saunders KO</author>
                    <author order="17">Parks R</author>
                    <author order="18">Foulger A</author>
                    <author order="19">Xia SM</author>
                    <author order="20">Bonsignori M</author>
                    <author order="21">Montefiori DC</author>
                    <author order="22">Louder M</author>
                    <author order="23">Eaton A</author>
                    <author order="24">Santra S</author>
                    <author order="25">Scearce R</author>
                    <author order="26">Sutherland L</author>
                    <author order="27">Newman A</author>
                    <author order="28">Bouton-Verville H</author>
                    <author order="29">Bowman C</author>
                    <author order="30">Bomze H</author>
                    <author order="31">Gao F</author>
                    <author order="32">Marshall DJ</author>
                    <author order="33">Whitesides JF</author>
                    <author order="34">Nie X</author>
                    <author order="35">Kelsoe G</author>
                    <author order="36">Reed SG</author>
                    <author order="37">Fox CB</author>
                    <author order="38">Clary K</author>
                    <author order="39">Koutsoukos M</author>
                    <author order="40">Franco D</author>
                    <author order="41">Mascola JR</author>
                    <author order="42">Harrison SC</author>
                    <author order="43">Haynes BF</author>
                    <author order="44">Verkoczy L</author>
                    <title>Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations.</title>
                    <journal_abbreviation>Nat Commun</journal_abbreviation>
                    <country>UK</country>
                    <volume>8</volume>
                    <first_page>1732</first_page>
                    <last_page>1732</last_page>
                    <year>2017</year>
                    <external_references type="PUBMED">29170366</external_references>
                    <external_references type="DOI">doi:10.1038/s41467-017-01336-3</external_references>
                    <external_references type="ISSN">2041-1723</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-9401</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>CH505 SOSIP.664 in complex with DH522.2 Fab</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>CH505 SOSIP.664 in complex with DH522.2 Fab</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="2">
                <name>CH505 SOSIP.664</name>
                <parent>1</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="3">
                <name>DH522.2 Fab</name>
                <parent>1</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <other_macromolecule macromolecule_id="1">
                <name>CH505 SOSIP.664</name>
                <natural_source database="NCBI">
                    <organism ncbi="11676">Human immunodeficiency virus 1</organism>
                </natural_source>
                <sequence>
                    <string>AENLWVTVYYGVPVWKEAKTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLKNVTENFNMWKNDMVDQMHEDVISLWDQSLKPCVKLTPLCVTLNCTNATASNSSIIEGMKNCSFNITTELRDKREKKNALFYKLDIVQLDGNSSQYRLINCNTSVITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFTGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENITNNVKTIIVHLNESVKIECTRPNNKTRTSIRIGPGQAFYATGQVIGDIREAYCNINESKWNETLQRVSKKLKEYFPHKNITFQPSSGGDLEITTHSFNCGGEFFYCNTSSLFNRTYMANSTDMANSTETNSTRTITIHCRIKQIINMWQEVGRAMYAPPIAGNITCISNITGLLLTRDGGKNNTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRRAVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD</string>
                </sequence>
                <classification>other</classification>
            </other_macromolecule>
            <other_macromolecule macromolecule_id="2">
                <name>DH522.2 Fab Heavy Chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <sequence>
                    <string>QVQLQESGPGLVKPSETLSLTCAVSGGSIGDDYYWNWIRQSPGKGLEWIGSIYGSFGGTNFNPSLKNRVTISMDTSNNQVSLKLNSVTAADTAVYYCARGSHSIVVLFGYYFDYWGQGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKD
YFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSN
TKVDKRVEIKT</string>
                </sequence>
                <classification>other</classification>
            </other_macromolecule>
            <other_macromolecule macromolecule_id="3">
                <name>DH522.2 Fab Light Chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <sequence>
                    <string>QSALTQPPSVSKSLGQSVTISCSGTTNDIGAYNGVS
WYQHHSDTAPRLLIYEVNKRPSGVSDRFSGSKSGNTASLTISGLQAEDEADYYCGSYRSG
STWVFGGGTRLTVLGQPKASPTVTLFPPSSEELQANKATLVCLISDFYPGVVKVAWKADG
SAVNAGVETTTPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAECS</string>
                </sequence>
                <classification>other</classification>
            </other_macromolecule>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.01</concentration>
                    <buffer>
                        <ph>7.5</ph>
                        <component>
                            <concentration units="mM">5.0</concentration>
                            <formula>C8H18N2O4S</formula>
                            <name>HEPES</name>
                        </component>
                        <component>
                            <concentration units="mM">150.0</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chloride</name>
                        </component>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>uranyl formate</material>
                    </staining>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI 12</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">25.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <resolution res_type="BY AUTHOR" units="&#8491;">28.1</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <number_images_used>15269</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>COMMON LINE</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>COMMON LINE</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="18967">
        <file>emd_9401.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>168</col>
            <row>168</row>
            <sec>168</sec>
        </dimensions>
        <origin>
            <col>-84</col>
            <row>-84</row>
            <sec>-84</sec>
        </origin>
        <spacing>
            <x>168</x>
            <y>168</y>
            <z>168</z>
        </spacing>
        <cell>
            <a units="&#8491;">357.84003</a>
            <b units="&#8491;">357.84003</b>
            <c units="&#8491;">357.84003</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-17.361639</minimum>
            <maximum>14.903893999999999</maximum>
            <average>-0.0074381735</average>
            <std>0.9265896</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.13</x>
            <y units="&#8491;">2.13</y>
            <z units="&#8491;">2.13</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>2.13</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-9401::::</label>
        <annotation_details>CH505 SOSIP.664 trimer in complex with DH522.2 Fab</annotation_details>
    </map>
</emd>