2025-06-04 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name OTHER atom_sites pdbx_audit_support _atom_sites.fract_transf_matrix[1][1] _atom_sites.fract_transf_matrix[2][2] _atom_sites.fract_transf_matrix[3][3] _pdbx_audit_support.funding_organization STRUCTURE_SUMMARY atom_site atom_type chem_comp entity pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_struct_sheet_hbond pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues pdbx_validate_close_contact pdbx_validate_main_chain_plane pdbx_validate_peptide_omega pdbx_validate_rmsd_angle pdbx_validate_torsion refine_ls_restr software struct_asym struct_conf struct_conn struct_conn_type struct_sheet struct_sheet_order struct_sheet_range struct_site struct_site_gen _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_struct_assembly_gen.asym_id_list _software.version _struct_sheet.number_strands STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name RCSB RCSB 2018-11-04 2019-03-06 2019-03-06 2025-06-04 National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) EY009339 United States National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) EY027283 United States National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) EY024864 United States Cryo-EM structure of phosphodiesterase 6 Gulati S Palczewski K Kovacik L Stahlberg H GAF domain, phosphohydrolase, G protein-coupled receptor signaling, SIGNALING PROTEIN Gulati S Palczewski K Engel A Stahlberg H Kovacik L Cryo-EM structure of phosphodiesterase 6 reveals insights into the allosteric regulation of type I phosphodiesterases. Sci Adv US 5 eaav4322 eaav4322 2019 30820458 doi:10.1126/sciadv.aav4322 2375-2548 6mzb FULLOVERLAP Phosphodiesterase 6 Phosphodiesterase 6 0 1 2 3 Bos taurus Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta Bos taurus Eye Retina 0.098449648 1 Bos taurus LEVO MSLSEGQVHRFLDQNPGFADQYFGRKLSPEDVANACEDGCPEGCTSFRELCQVEESAALFELVQDMQENVNMERVVFKIL RRLCSILHADRCSLFMYRQRNGVAELATRLFSVQPDSVLEDCLVPPDSEIVFPLDIGVVGHVAQTKKMVNVQDVMECPHF SSFADELTDYVTRNILATPIMNGKDVVAVIMAVNKLDGPCFTSEDEDVFLKYLNFGTLNLKIYHLSYLHNCETRRGQVLL WSANKVFEELTDIERQFHKAFYTVRAYLNCDRYSVGLLDMTKEKEFFDVWPVLMGEAQAYSGPRTPDGREILFYKVIDYI LHGKEDIKVIPSPPADHWALASGLPTYVAESGFICNIMNAPADEMFNFQEGPLDDSGWIVKNVLSMPIVNKKEEIVGVAT FYNRKDGKPFDEQDEVLMESLTQFLGWSVLNTDTYDKMNKLENRKDIAQDMVLYHVRCDREEIQLILPTRERLGKEPADC EEDELGKILKEVLPGPAKFDIYEFHFSDLECTELELVKCGIQMYYELGVVRKFQIPQEVLVRFLFSVSKGYRRITYHNWR HGFNVAQTMFTLLMTGKLKSYYTDLEAFAMVTAGLCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHLEFGKFLLSEE TLNIYQNLNRRQHEHVIHLMDIAIIATDLALYFKKRTMFQKIVDESKNYEDRKSWVEYLSLETTRKEIVMAMMMTACDLS AITKPWEVQSKVALLVAAEFWEQGDLERTVLDQQPIPMMDRNKAAELPKLQVGFIDFVCTFVYKEFSRFHEEILPMFDRL QNNRKEWKALADEYEAKVKALEEDQKKETTAKKVGTEICNGGPAPRSSTCRIL P23439 3.1.4.35 Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha Bos taurus Eye Retina 0.099461789 1 Bos taurus LEVO MGEVTAEEVEKFLDSNVSFAKQYYNLRYRAKVISDLLGPREAAVDFSNYHALNSVEESEIIFDLLRDFQDNLQAEKCVFN VMKKLCFLLQADRMSLFMYRARNGIAELATRLFNVHKDAVLEECLVAPDSEIVFPLDMGVVGHVALSKKIVNVPNTEEDE HFCDFVDTLTEYQTKNILASPIMNGKDVVAIIMVVNKVDGPHFTENDEEILLKYLNFANLIMKVFHLSYLHNCETRRGQI LLWSGSKVFEELTDIERQFHKALYTVRAFLNCDRYSVGLLDMTKQKEFFDVWPVLMGEAPPYAGPRTPDGREINFYKVID YILHGKEDIKVIPNPPPDHWALVSGLPTYVAQNGLICNIMNAPSEDFFAFQKEPLDESGWMIKNVLSMPIVNKKEEIVGV ATFYNRKDGKPFDEMDETLMESLTQFLGWSVLNPDTYELMNKLENRKDIFQDMVKYHVKCDNEEIQTILKTREVYGKEPW ECEEEELAEILQGELPDADKYEINKFHFSDLPLTELELVKCGIQMYYELKVVDKFHIPQEALVRFMYSLSKGYRRITYHN WRHGFNVGQTMFSLLVTGKLKRYFTDLEALAMVTAAFCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHLEFGKTLLR DESLNIFQNLNRRQHEHAIHMMDIAIIATDLALYFKKRTMFQKIVDQSKTYETQQEWTQYMMLDQTRKEIVMAMMMTACD LSAITKPWEVQSKVALLVAAEFWEQGDLERTVLQQNPIPMMDRNKADELPKLQVGFIDFVCTFVYKEFSRFHEEITPMLD GITNNRKEWKALADEYETKMKGLEEEKQKQQAANQAAAGSQHGGKQPGGGPASKSCCVQ P11541 3.1.4.35 Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma Bos taurus Eye Retina 0.009684228999999999 2 Bos taurus LEVO MNLEPPKAEIRSATRVMGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHE LAQYGII P04972 3.1.4.35 ZINC ION 6.5409e-05 2 ZN MAGNESIUM ION 2.4305e-05 2 MG GUANOSINE-3',5'-MONOPHOSPHATE 0.00034520499999999996 2 35G singleParticle particle 7.5 Quantifoil R2/2 COPPER ETHANE FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 80.0 1 NONE C1 3.4 FSC 0.143 CUT-OFF 43597 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION emd_9297.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 84 84 84 192 192 192 203.13599 203.13599 203.13599 90.0 90.0 90.0 X Y Z -0.5842323 32.156455999999999 0.15703212 1.3413881 1.058 1.058 1.058 1.0 AUTHOR Cryo-EM structure of phosphodiesterase 6, primary map emd_9297_msk_1.map