2018-10-24 REL RCSB RCSB RCSB 2018-10-15 2018-10-24 2018-10-24 2018-10-24 Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine using published picks (EMPIAR-10028 reprocessing) Bepler T Morin A Brasch J Shapiro L Noble AJ Berger B Bepler T Morin A Noble AJ Brasch J Shapiro L Berger B Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs. Res Comput Mol Biol 10812 245 247 2018 29707703 Wong W Bai XC Brown A Fernandez IS Hanssen E Condron M Tan YH Baum J Scheres SH Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. Elife US 3 2014 24913268 doi:10.7554/eLife.03080 2050-084X EMD-9206 associated EM volume EMD-9211 other EM volume EMD-9201 other EM volume EMD-9202 other EM volume EMD-9207 other EM volume EMD-9208 other EM volume EMD-9209 other EM volume EMD-9210 other EM volume EMD-9194 other EM volume Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine 0
published picks
Plasmodium falciparum Plasmodium falciparum singleParticle particle 0.6 7.4
20 mM Hepes pH7.4, 40 mM KCH3COO, 10 mM NH4CH3COO, 10 mM Mg(CH3COO)2 and 5 mM 2-mecaptoethanol
 Quantifoil R2/2 CARBON GLOW DISCHARGE
home-made continuous carbon film
 ETHANE FEI VITROBOT MARK IV
Blot 2.5 seconds before plunging..
FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.0 0.8 3.8 78000. GATAN LIQUID NITROGEN FEI FALCON II (4k x 4k) 20.0 1
CryoSparc v0 homogeneous 3D refinement. No particle pre-processing.
105247
All initial particles were used in the final reconstruction; ie. no particle filtering or classification was performed.
 Cryosparc v0 ab initio 1 C1 3.05 FSC 0.143 CUT-OFF cryoSPARC 0 105247 OTHER
Cryosparc v0
 OTHER
Cryosparc v0
 emd_9206.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 482.40002 482.40002 482.40002 90.0 90.0 90.0 X Y Z -2.075989 5.9926944 0.0078605665 0.25996098 1.34 1.34 1.34 0.592 AUTHOR Cryosparc v0 with published picks sharpened emd_9206_msk_1.map emd_9206_additional.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 482.40002 482.40002 482.40002 90.0 90.0 90.0 X Y Z -0.8021067 2.6905327 0.0078605665 0.20555805 1.34 1.34 1.34 1.25 AUTHOR Cryosparc v0 with published picks unsharpened emd_9206_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 482.40002 482.40002 482.40002 90.0 90.0 90.0 X Y Z -0.940963 2.803176 0.014060679 0.21411455 1.34 1.34 1.34 1.25 AUTHOR Cryosparc v0 with published picks half map emd_9206_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 482.40002 482.40002 482.40002 90.0 90.0 90.0 X Y Z -0.90904474 2.857101 0.014044365 0.21388172 1.34 1.34 1.34 1.25 AUTHOR Cryosparc v0 with published picks half map