2024-10-23 REL RCSB RCSB RCSB 2018-09-19 2018-10-03 2019-01-16 2024-10-23 National Institutes of Health/National Center for Research Resources (NIH/NCRR) AI076331 United States Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing human monoclonal antibody ZIKV-195 Long F Rossmann MG virus, monoclonal antibody, complex, VIRUS-IMMUNE SYSTEM complex Long F Doyle M Fernandez E Miller AS Klose T Sevvana M Bryan A Davidson E Doranz BJ Kuhn RJ Diamond MS Crowe Jr JE Rossmann MG Structural basis of a potent human monoclonal antibody against Zika virus targeting a quaternary epitope. Proc. Natl. Acad. Sci. U.S.A. US 116 1591 1596 2019 30642974 doi:10.1073/pnas.1815432116 1091-6490 0040 PNASA6 6mid FULLOVERLAP ZIKV virion in complex with Fab fragments of the potently neutralizing human monoclonal antibody ZIKV-195 ZIKV virion in complex with Fab fragments of the potently neutralizing human monoclonal antibody ZIKV-195 0 1 2 3 4
Purified from infected Vero cells overexpressing the furin protease
 Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013) 1 1 2 Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013) isolate ZIKV/Human/French Polynesia/10087PF/2013 VIRION STRAIN true false monoclonal antibody ZIKV-195 1 3 4 Homo sapiens E protein Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013) isolate ZIKV/Human/French Polynesia/10087PF/2013 0.054444051 3 LEVO IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEA YLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAE TLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHW HRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTK NGSISLMCLALGGVLIFLSTAVSA A0A024B7W1 M protein Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013) isolate ZIKV/Human/French Polynesia/10087PF/2013 0.008496883 3 LEVO AVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKVIYLVMILLIAPAYS A0A024B7W1 monoclonal antibody ZIKV-195 heavy chain Homo sapiens 0.014148738999999999 1 LEVO QVQLVESGGGVVHPGRSLRLSCAASGFTFSSSAMHWVRQAPGKGLEWVAVISYDGSNKYYGDSVKGRFTISRDNSKNTLY LQMHSLRAEDTAVYYCAKDRDAYNTVGYFAYYYGMDVWGQGTLVTVSS monoclonal antibody ZIKV-195 light chain Homo sapiens 0.011750901999999999 1 LEVO QSVLTQPPSVSEAPRQRVTISCSGSSSNIGNNAVNWYQQLPGKAPKLLIYYDDLLPSGVSDRFSGSKSGTSASLAISGLQ SEDEADYYCAAWDDSLTRYVFGTGTKVTVL A0A0B4J1U3 singleParticle particle 1.00 8.0 20.0 Tris 120.0 NaCl sodium chloride 1.0 EDTA
NTE buffer at pH 8.0
unspecified
 ETHANE 90 298 GATAN CRYOPLUNGE 3
Fab fragments were mixed with purified mature virus particles to make complexes.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) COUNTING 1691 30.0 1 I 4.0 FSC 0.143 CUT-OFF jspr
The map was masked by removing the internal nucleic acid region and the external background region.
10687 RANDOM ASSIGNMENT jspr PROJECTION MATCHING jspr RELION emd_9131.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 829.44 829.44 829.44 90.0 90.0 90.0 X Y Z -101.695049999999995 169.96459999999999 0.16021295 7.2527075 1.62 1.62 1.62 15.0 AUTHOR ZIKV virion in complex with Fab fragments of the potently neutralizing human monoclonal antibody ZIKV-195. Different contour levels are required to visualize the viral components and the bound Fab molecules. 6CO8 PDB experimental model FLEXIBLE FIT
The occupancy of bound Fabs was low. Due to poor density, only the variable domain of Fab molecule was modeled and fit into one of the three Fab binding sites on each icosahedral asymmetric unit.
REAL emd_9131_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 829.44 829.44 829.44 90.0 90.0 90.0 X Y Z -11.778727999999999 23.7441 0.0894266 1.4418 1.62 1.62 1.62 EMDB Half map #2 emd_9131_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 829.44 829.44 829.44 90.0 90.0 90.0 X Y Z -10.409791999999999 22.669867 0.08562164 1.4112499 1.62 1.62 1.62 EMDB Half map #1