2024-11-06 REL RCSB RCSB RCSB 2018-09-13 2018-11-28 2018-11-28 2024-11-06 National Institutes of Health/National Center for Research Resources (NIH/NCRR) R01GM102498 United States National Institutes of Health/National Center for Research Resources (NIH/NCRR) R01GM098672 United States National Institutes of Health/National Center for Research Resources (NIH/NCRR) S10OD020054 United States National Institutes of Health/National Center for Research Resources (NIH/NCRR) S10OD021741 United States National Institutes of Health/National Center for Research Resources (NIH/NCRR) R35GM122530 United States Structural basis for cholesterol transport-like activity of the Hedgehog receptor Patched Zhang Y Bulkley D Receptor Membrane protein, MEMBRANE PROTEIN Zhang Y Bulkley DP Xin Y Roberts KJ Asarnow DE Sharma A Myers BR Cho W Cheng Y Beachy PA Structural Basis for Cholesterol Transport-like Activity of the Hedgehog Receptor Patched. Cell 175 1352 1364.e14 2018 30415841 doi:10.1016/j.cell.2018.10.026 1097-4172 6mg8 FULLOVERLAP Patched1 protein solubilized in amphipol Patched1 protein solubilized in amphipol 0 1 Homo sapiens 0.1452 Protein patched homolog 1 Mus musculus 0.145357844 1 Homo sapiens LEVO MASAGNAAGALGRQAGGGRRRRTGGPHRAAPDRDYLHRPSYCDAAFALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYI QKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEA LLQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPL RWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDVALVLNGGCQGLSRKY MHWQEELIVGGTVKNATGKLVSAHALQTMFQLMTPKQMYEHFRGYDYVSHINWNEDRAAAILEAWQRTYVEVVHQSVAPN STQKVLPFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGIS FNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFS LQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYTEPMQSTVQLRTEYDPHTHVYYTT AEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSDSSLHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVILLFL GLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENK QLPQMWLHYFRDWLQGLQDAFDSDWETGRIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKQRLVDADGIINPSA FYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRVIC NNYTSLGLSSYPNGYPFLFWEQYISLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKL SAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAI LTVLGVLNGLVLLPVLLSFFGPCPEVSPANGLNRLPTPSPEPPPSVVRFAVPPGHTNNGSDSSDSEYSSQTTVSGISEEL RQYEAQQGAGGPAHQVIVEATENPVFARSTVVHPDSRHQPPLTPRQQPHLDSGSLSPGRQGQQPRRDMDEKTTGWRGGHV VEGLAGELEQLRARLEHHPQGQREP Q61115 Q61115 CHOLESTEROL 0.000386654 4 CLR singleParticle particle 0.3 7.4 Quantifoil R1.2/1.3 COPPER 400 CARBON HOLEY GLOW DISCHARGE AIR ETHANE 100 23 FEI VITROBOT MARK III FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1 5236 8.0 38.0 1 378828
Number of particles selected after rough initial 2D classification
Ab initio model generated from CryoSparc
 C1 3.6 FSC 0.143 CUT-OFF RELION 2 245725 MAXIMUM LIKELIHOOD cryoSPARC 1
Initial angles were assigned by ab initio reconstruction in CryoSparc
 MAXIMUM LIKELIHOOD RELION 2 RELION 2 emd_9111.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 445.4 445.4 445.4 90.0 90.0 90.0 X Y Z -0.16621485 0.2775069 0.000110226545 0.0026982878 1.31 1.31 1.31 0.04 AUTHOR PTCH1 monomer AB INITIO MODEL REAL emd_9111_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 445.4 445.4 445.4 90.0 90.0 90.0 X Y Z -4.6967425 6.003099 0.0031911286 0.061090007 1.31 1.31 1.31 AUTHOR PTCH1 dimer, C2 symmetry emd_9111_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 445.4 445.4 445.4 90.0 90.0 90.0 X Y Z -5.0145874 6.391216 0.0030490237 0.04744208 1.31 1.31 1.31 AUTHOR PTCH1 dimer, C1 symmetry emd_9111_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 445.4 445.4 445.4 90.0 90.0 90.0 X Y Z -0.016677907 0.059526872 -0.000014974063 0.0010543808 1.31 1.31 1.31 AUTHOR Independent half map 1 used to calculate final monomer map emd_9111_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 445.4 445.4 445.4 90.0 90.0 90.0 X Y Z -0.017007519 0.058138344 -0.000014921295 0.0010543282 1.31 1.31 1.31 AUTHOR Independent half map 2 used to calculate final monomer map