2019-12-25 REL RCSB RCSB RCSB 2018-08-13 2018-09-19 2019-02-27 2019-12-25 National Science Foundation (NSF, United States) M CB - 1515260 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI081726 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI076331 United States Analysis of bacteriophage phiX174 tomograms using the locked self-rotation function Fokine A Sun Y Khare B Rossmann MG Fokine A Khare B Sun Y Rossmann MG Enhancement of tomogram interpretability using the locked self-rotation function. J. Struct. Biol. US 205 53 58 2019 30742896 doi:10.1016/j.jsb.2019.01.006 1095-8657 0803 JSBIEM EMD-9040 associated EM volume Enterobacteria phage phiX174 Enterobacteria phage phiX174 0
The virus was grown in E.coli cells.
Enterobacteria phage phiX174 Escherichia coli 320.0 1 VIRION STRAIN false false tomography particle 7.4 0.05 NH4Cl4 0.05 NaCl 0.1 KCl 0.1 Tris-HCl 0.001 MgSO4 0.005 EDTA C-flat-2/2 4C COPPER GLOW DISCHARGE ETHANE GATAN CRYOPLUNGE 3
The concentration of the virus was 10**12 pfu/ml
Aurion, Wageningen, Netherland 10 NO SECTIONING FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 3.0 11000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1.73 1 BACK PROJECTION IMOD 41 emd_9040.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 5 5 5 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -30.059168 38.214554 0.0000000704 9.404064 5.2 5.2 5.2 AUTHOR The map was calculated by averaging of ten icosahedrally-averaged maps of individual phiX174 particles. emd_9040_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 -40 -40 -40 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -4.641859 4.2301755 0.00000001265 0.999999 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 -40 -40 -40 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -5.5625367 4.8542128 0.00000001161 0.99999905 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 5 5 5 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -4.5334206 5.4153905 0.00000000114 0.99999905 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 5 5 5 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -4.669965 4.9793687 -0.00000001095 0.999999 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 5 5 5 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -4.4903483 5.580944 0.00000000368 0.999999 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 5 5 5 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -5.0452223 4.985917 0.00000000471 0.99999905 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 5 5 5 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -4.583983 5.3351655 -0.00000000199 0.99999905 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 5 5 5 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -29.186642 28.554922 0.00000002362 5.95753 5.2 5.2 5.2 AUTHOR The map was produced by averaging of eight maps of individual phiX174 particles calculated using the D5 symmetry. emd_9040_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 -40 -40 -40 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -4.679771 4.3957415 0.5640715700 0.99999905 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 5 5 5 80 80 80 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -4.951507 5.290208 0.00000000186 0.999999 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle. emd_9040_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 665.6 665.6 665.6 90.0 90.0 90.0 X Y Z -4.6649113 5.670931 0.0000026791 1.0000503 5.2 5.2 5.2 AUTHOR Tomogram of one bacteriophage phiX174 particle.