Full-length S. pombe Mdn1 in the presence of AMPPNP (ring region)

2019-05-29 REL RCSB RCSB RCSB 2018-08-09 2018-08-29 2018-10-17 2019-05-29 Full-length S. pombe Mdn1 in the presence of AMPPNP (ring region) Chen Z Suzuki H Wang AC DiMaio F Walz T Kapoor TM Chen Z Suzuki H Kobayashi Y Wang AC DiMaio F Kawashima SA Walz T Kapoor TM Structural Insights into Mdn1, an Essential AAA Protein Required for Ribosome Biogenesis. Cell 175 822 834.e18 2018 30318141 doi:10.1016/j.cell.2018.09.015 1097-4172 EMD-9032 associated EM volume

EMD-9033 other EM volume EMD-9034 other EM volume EMD-9035 other EM volume EMD-9036 other EM volume 6or5 FULLOVERLAP N-terminal density map of the full-length Mdn1 in the presence of AMPPNP N-terminal density map of the full-length Mdn1 in the presence of AMPPNP 0 1 Schizosaccharomyces pombe 0.54 Trichoplusia ni Midasin Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.262860312 1 Trichoplusia ni LEVO MDVLIEWVAIYPQIYDILEHINYVPSNTLQRLRLHQPWSKIDYDVWFLYASDEIRETCKVKYYGETKTYGEVFVLENERI SQLHRLFVSWTVSERAEHLKNLLFDAGLSNLPLVELGGNVFFNSHVPLPCSLVLTKSTQENLNRITPYLVQKRPILLAGP EGIGKKFLITQIAAKLGQQIIRIHLSDSTDPKMLIGTYTSPKPGEFEWQPGVLTQAVITGKWILFTNIEHAPSEVLSVLL PLLEKRQLVIPSRGETIYAKGSFQMFATSSMKTKILGQRLWQILDLTYQPDECVEVVSTLYPVLSIICPTLYSVYKDIFD LFSQRSFLATSKIYRRLCLRDFYKFIKRVAFLYHKFMIPSDHVVISQELQDAVFKEAIDMFGAFIPSRDGFDLVVRNVAI ELNIPPEKALQLRYSIPVFQNLEHNINIGRCSLKKLSTIRSCSTNSYAFTSSSLGLLEQLAAGVQTNEPLLLVGETGTGK TTTIQLLAGLLGQKVTVINMSQQTESSDMLGGYKPINASTLGLPLHERFIDIFEQTFSSKKNAKFISMASTSARRFRWKT CLKIWKEACKLSKTVLDGQQPLPNPQKRQKRLSNQVELRNQWAKFEKEVEDFEKVLTGGSNGFMFSFVEGALVKAVRSGH WVLLDEINLASLETLEPIGQLLSSYESGILLSERGDITPITPHKNFRLFGCMNPSTDVGKRELEPSFRSRFTEIYVHSPD QNLDDLLSIIQKYIGSLCIGNEHVIREVAELYQVAKSLSLDGSLVDGAGQRPHYTVRTLSRTLSYVTEIAPIYGLRRSLY EGFCMSFLTLLDHTSESLLYNHVVRFTLGELNRDQQNAILKQIPKVPDHSSYIAFCHYWLRRGSFPVEEQEHYIITPFVQ KNLLNIARACSTRMFPILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHEHTDLQEYIGTYVTDDNGSLSFREGVLVEALR NGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQVLVKPHPEFMLFATQNPPGVYAGRKHLSRAFRNRFLEIHFDDI PENELETILHKRCKIAPSYAAKIVQVFRELSLRRQTTRIFEQKNSFATLRDLFRWAFREAVGYQQLAENGYMLLAERARD QKDKLAVQEVIEKVMKVKIDTDGIYNLDSMEIFQDMSLKEGPLSKVVWTRPMIRLFCLVWRCLLAKEPVLLVGDTGCGKT TVCQILAECLHKELHIINAHQDTENGDIIGAQRPVRNRSAVNYSLHSQLCEKFNVQESLDSIDDLIEKFEKLSSSEKNDN LSNLIERQIIKYRSLFEWHDGALVTAMKQGDFFLLDEISLADDSVLERLNSVLELSRTLTLVEHSNAAVSLTAKDGFAFF ATMNPGGDYGKKELSPALRNRFTEIWVPPMVDTEDILKIVEGKLHNNKIELARPLVEYAKWHANEYLYTDVISIRDVLSA VEFINACEILDLNLVLFNAVSMVFIDALGSFTTFSLSNNLASLHAERQRCFAKLNELAGSNIMASKSADISIKFSDSSFF IGDFGIPLGDSVESDSTYSLHTDTTLMNASKVLRALQVLKPILLEGSPGVGKTSLITALARETGHQLVRINLSDQTDLMD LFGSDVPVEGGEGGQFAWRDAPFLAAMRNGHWVLLDELNLASQSVLEGLNACLDHRNEAYIPELDKVFKAHPNFRVFAAQ NPQHQGGGRKGLPRSFINRFSVVYVEALKEKDMIEIAACNYHQVNEDWRLKIIKFMFRLQDNIEKDISFGSFGSPWEFNL RDTLRWLQLLNDAPKYTCVSPADYLEVMVLHRMRTVEDRVRTCELFKEVFDIDYEPRTIGFSLSSQCFKVGHSLLVRDVE RQKTLLDSQNILQSQLPVLESVITCINKKWPCILVGDTATGKTCILRLLAAIAGAKIKEMAVNSDTDTMDLIGEYEQIDI SRKASELFTDLSQQLLNIVIKYRNFDNIFRETSLYTLTTTSFKTHSQAFTLLQKVVDQLDQLKIHETLVHSLGDIHEKAR KLLAEFSASPAGRFEWFDGYLLKAVEEGHWFVLDNANLCSPAVLDRLNSLLEHKGVLIVNEKTTEDGHPKTIKPHPNFRL FLTVNPVYGELSRAMRNRGVEIFLLKEALTEIDKKQMSLLEPAPISSAVDTLASNISYIKYVFETMG(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 0.000506196 5 ANP singleParticle particle 0.15 7.5 Quantifoil R1.2/1.3 GOLD 400 CARBON HOLEY ARRAY GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.4 3.0 22500. FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1-50 8446 15.0 88.8 1 CTFFIND 4.1.5 C1 4.0 FSC 0.143 CUT-OFF FREALIGN 313336 ANGULAR RECONSTITUTION RELION 2.0.3 ANGULAR RECONSTITUTION FREALIGN 6 RELION 2.0.3 emd_9032.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 390.0 390.0 390.0 90.0 90.0 90.0 X Y Z -9.2775345 22.051939000000001 -0.030373996 0.7611648 1.3 1.3 1.3 6.0 AUTHOR ::::EMDATABANK.org::::EMD-9032:::: Full-length S. pombe Mdn1 in the presence of AMPPNP (ring region), primary map REAL