2018-09-26 REL RCSB RCSB RCSB 2018-08-08 2018-09-26 2018-09-26 2018-09-26 HIV-1 Envelope Glycoprotein Clone B41_delCT in complex with the broadly neutralizing antibody Fab PGT151 Berndsen ZT Ward AB Cao L Pauthner M Andrabi R Rantalainen K Berndsen Z Diedrich JK Menis S Sok D Bastidas R Park SR Delahunty CM He L Guenaga J Wyatt RT Schief WR Ward AB Burton DR Paulson JC Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer. Nat Commun UK 9 3693 3693 2018 30209313 doi:10.1038/s41467-018-06121-4 2041-1723 EMD-9030 associated EM volume HIV-1 Envelope Glycoprotein Clone B41dCT in complex with the broadly neutralizing antibody Fab PGT151 HIV-1 Envelope Glycoprotein Clone B41dCT in complex with the broadly neutralizing antibody Fab PGT151 0 1 2 3 Human immunodeficiency virus 1 Homo sapiens HIV-1 Envelope Glycoprotein Clone B41_delCT Human immunodeficiency virus 1 Homo sapiens LEVO MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAAKKWVTVYYGVPVWKEATTT LFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNNMVEQMHEDIISL WDQSLKPCVKLTPLCVTLNCNNVNTNNTNNSTNATISDWEKMETGEMKNCSFNVTTSIRD KIKKEYALFYKLDVVPLENKNNINNTNITNYRLINCNTSVITQACPKVSFEPIPIHYCAP AGFAILKCNSKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENITDN AKTIIVQLNEAVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGNIRQAHCNISKARWNET LGQIVAKLEEQFPNKTIIFNHSSGGDPEIVTHSFNCGGEFFYCNTTPLFNSTWNNTRTDD YPTGGEQNITLQCRIKQIINMWQGVGKAMYAPPIRGQIRCSSNITGLLLTRDGGRDQNGT ETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTAAKRRVVQREKRAVGLGAFILGFLGA AGSTMGAASMALTVQARLLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVER YLRDQQLLGIWGCSGKIICTTNVPWNDSWSNKTINEIWDNMTWMQWEKEIDNYTQHIYTL LEVSQIQQEKNEQELLELDKWDSLWNWFSISNWLWYIKIFIMIVGGLIGLRIVFTVLSII SRVRQGGGSGGGWSHPQFEK Immunoglobulin G PGT151 Fab, Heavy chain Homo sapiens Homo sapiens LEVO RVQLVESGGGVVQPGKSVRLSCVVSDFPFSKYPMYWVRQAPGKGLEWVAAISGDAWHVVYSNSVQGRFLVSRDNVKNTLY LEMNSLKIEDTAVYRCARMFQESGPPRLDRWSGRNYYYYSGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAAL GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK Immunoglobulin G PGT151, Light chain LEVO DIVMTQTPLSLSVTPGQPASISCKSSESLRQSNGKTSLYWYRQKPGQSPQLLVFEVSNRFSGVSDRFVGSGSGTDFTLRI SRVEAEDVGFYYCMQSKDFPLTFGGGTKVDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC singleParticle particle 1.13 7.4 Quantifoil, UltrAuFoil, R1.2/1.3 COPPER 300 PLASMA CLEANING ETHANE 100 277.15 FEI VITROBOT MARK IV
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) COUNTING 1 2238 8.5 62.0 1 MotionCorr2 C1 6.7 FSC 0.143 CUT-OFF RELION 2 6574 PROJECTION MATCHING RELION 2 PROJECTION MATCHING RELION 2 RELION 2 emd_9030.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 329.59998 329.59998 329.59998 90.0 90.0 90.0 X Y Z -0.023851287 0.23575324 0.00040086344 0.0048370673 1.03 1.03 1.03 0.0234 AUTHOR primary map emd_9030_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 329.59998 329.59998 329.59998 90.0 90.0 90.0 X Y Z -0.034988306 0.09564887 0.00020119835 0.004550141 1.03 1.03 1.03 0.0234 AUTHOR Half map 1 emd_9030_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 329.59998 329.59998 329.59998 90.0 90.0 90.0 X Y Z -0.033912092 0.087006524 0.0001996651 0.0042164656 1.03 1.03 1.03 0.0234 AUTHOR Half Map 2