2024-03-13 REL RCSB RCSB RCSB 2018-08-01 2018-08-22 2018-10-03 2024-03-13 National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) DP5 OD021396 United States National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) U54GM103368 United States EsCas13d-crRNA binary complex Zhang C Lyumkis D CRISPR-Cas, RNase, Complex, RNA BINDING PROTEIN-RNA complex Zhang C Konermann S Brideau NJ Lotfy P Wu X Novick SJ Strutzenberg T Griffin PR Hsu PD Lyumkis D Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d. Cell 175 212 223.e17 2018 30241607 doi:10.1016/j.cell.2018.09.001 1097-4172 EMD-9014 other EM volume EMD-9015 other EM volume 6e9e FULLOVERLAP Binary complex of EsCas13d with crRNA and Mg2+ Binary complex of EsCas13d with crRNA and Mg2+ 0 1 2 unidentified bacterium 0.125 crRNA (52-MER) bacterium 0.016385846 1 CACCCGUGCAAAAAUGCAGGGGUCUAAAACGACCUGAAUAUUUCAGAUCAA EsCas13d [Eubacterium] siraeum DSM 15702 0.11082893799999999 1 Escherichia coli LEVO MGKKIHARDLREQRKTDRTEKFADQNKKREAERAVPKKDAAVSVKSVSSVSSKKDNVTKSMAKAAGVKSVFAVGNTVYMT SFGRGNDAVLEQKIVDTSHEPLNIDDPAYQLNVVTMNGYSVTGHRGETVSAVTDNPLRRFNGRKKDEPEQSVPTDMLCLK PTLEKKFFGKEFDDNIHIQLIYNILDIEKILAVYSTNAIYALNNMSADENIENSDFFMKRTTDETFDDFEKKKESTNSRE KADFDAFEKFIGNYRLAYFADAFYVNKKNPKGKAKNVLREDKELYSVLTLIGKLRHWCVHSEEGRAEFWLYKLDELKDDF KNVLDVVYNRPVEEINNRFIENNKVNIQILGSVYKNTDIAELVRSYYEFLITKKYKNMGFSIKKLRESMLEGKGYADKEY DSVRNKLYQMTDFILYTGYINEDSDRADDLVNTLRSSLKEDDKTTVYCKEADYLWKKYRESIREVADALDGDNIKKLSKS NIEIQEDKLRKCFISYADSVSEFTKLIYLLTRFLSGKEINDLVTTLINKFDNIRSFLEIMDELGLDRTFTAEYSFFEGST KYLAELVELNSFVKSCSFDINAKRTMYRDALDILGIESDKTEEDIEKMIDNILQIDANGDKKLKKNNGLRNFIASNVIDS NRFKYLVRYGNPKKIRETAKCKPAVRFVLNEIPDAQIERYYEACCPKNTALCSANKRREKLADMIAEIKFENFSDAGNYQ KANVTSRTSEAEIKRKNQAIIRLYLTVMYIMLKNLVNVNARYVIAFHCVERDTKLYAESGLEVGNIEKNKTNLTMAVMGV KLENGIIKTEFDKSFAENAANRYLRNARWYKLILDNLKKSERAVVNEFRNTVCHLNAIRNININIKEIKEVENYFALYHY LIQKHLENRFADKKVERDTGDFISKLEEHKTYCKDFVKAYCTPFGYNLVRYKNLTIDGLFDKNYPGKDDSDEQK B0MS50 MAGNESIUM ION 2.4305e-05 1 MG singleParticle particle 1 7.5 25.0 Tris-HCl 100.0 NaCl sodium chloride 1.0 DTT 5.0 glycerol 1.0 MgCl2 magnesium chloride 0.1 Amphipol A8-35 Quantifoil, UltrAuFoil, R1.2/1.3 GOLD 300 PLASMA CLEANING OTHER ETHANE 80 HOMEMADE PLUNGER FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 70.0 2.7 0.8 1.5 57000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1-120 1435 56.8 1 C1 FOURIER SPACE 3.4 FSC 0.143 CUT-OFF cisTEM 43786 PROJECTION MATCHING RELION PROJECTION MATCHING cisTEM emd_9013.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 202.24 202.24 202.24 90.0 90.0 90.0 X Y Z -0.378704 0.7423917 -0.0045994124 0.029645327 0.79 0.79 0.79 0.25 AUTHOR EsCas13d-crRNA binary complex AB INITIO MODEL Correlation coefficient REAL emd_9013_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 319 319 319 0 0 0 319 319 319 252.01001 252.01001 252.01001 90.0 90.0 90.0 X Y Z -0.104966 1.0 0.032716423 0.16068764 0.79 0.79 0.79 AUTHOR 3D FSC map emd_9013_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 202.24 202.24 202.24 90.0 90.0 90.0 X Y Z -0.20199992 0.26207566 -0.0013825282 0.018412894 0.79 0.79 0.79 EMDB EsCas13d-crRNA binary complex, half map #2 emd_9013_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 202.24 202.24 202.24 90.0 90.0 90.0 X Y Z -0.19957387 0.26718938 -0.001337187 0.018188808 0.79 0.79 0.79 EMDB EsCas13d-crRNA binary complex, half map #1