2024-03-20 REL RCSB RCSB RCSB 2018-07-12 2018-08-08 2018-12-26 2024-03-20 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) 5SC1AI114843 United States Mechanism of cellular recognition by PCV2 Khayat R Dhindwal S viral jelly-roll, VIRUS LIKE PARTICLE Dhindwal S Avila B Feng S Khayat R Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid. J.Virol. US 93 2019 30602608 doi:10.1128/JVI.02222-18 1098-5514 0825 JOVIAM EMD-8939 other EM volume
Unliganded image reconstruction
 EMD-8970 other EM volume EMD-8971 other EM volume EMD-8972 other EM volume EMD-8973 other EM volume EMD-8974 other EM volume EMD-8975 other EM volume 6e2r FULLOVERLAP Porcine circovirus 2 Porcine circovirus 2 0 1 Porcine circovirus 2 Sus scrofa Capsid protein 215.0 1 VIRUS-LIKE PARTICLE SPECIES false false Capsid protein of PCV2 Porcine circovirus 2 0.027899794999999998 60 Trichoplusia ni LEVO MTYPRRRYRRRRHRPRSHLGQILRRRPWLVHPRHRYRWRRKNGIFNTRLSRTFGYTIKRTTVKTPSWAVDMMRFNINDFL PPGGGSNPRSVPFEYYRIRKVKVEFWPCSPITQGDRGVGSSAVILDDNFVTKATALTYDPYVNYSSRHTITQPFSYHSRY FTPKPVLDSTIDYFQPNNKRNQLWLRLQTAGNVDHVGLGTAFENSIYDQEYNIRVTMYVQFREFNLKDPPLNP Q805N7 singleParticle particle 0.718 7.0 20.0 HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid) 250.0 NaCl Sodium Chloride 0.1 TCEP Tris(2-carboxyethyl)phosphine 2.0 EDTA Ethylenediaminetetraacetic acid CARBON LACEY
unspecified
 ETHANE 100 4 FEI VITROBOT MARK IV
This sample was monodisperse
 FEI TITAN FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 0.28 3.2 NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 2-50 1 1149 5.0 35.0 1 54409 3R0R
low pass filtered to 60 Angstroms
 1 I BACK PROJECTION 2.8 FSC 0.143 CUT-OFF cryoSPARC Default parameters 93725 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD cryoSPARC 3 10000.0 RELION emd_8969.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 327.0 327.0 327.0 90.0 90.0 90.0 X Y Z -0.17405103 0.33771232 0.002117193 0.016969698 1.09 1.09 1.09 0.04 AUTHOR Symmetrized image reconstruction of PCV2 in complex with heparin sulfate FLEXIBLE FIT
Several iterations of refinement
Correlation coefficient REAL 35.5