<emd emdb_id="EMD-8926" version="3.0.1.3" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_3/emdb.xsd">
    <admin>
        <current_status>
            <date>2019-01-09</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-06-28</deposition>
            <header_release>2018-07-11</header_release>
            <map_release>2018-12-19</map_release>
            <update>2019-01-09</update>
        </key_dates>
        <title>Mutated p53-DNA assembly</title>
        <authors_list>
            <author>Kelly DF</author>
            <author>Dearnaley WJ</author>
            <author>Liang Y</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Liang Y</author>
                    <author order="2">Dearnaley WJ</author>
                    <author order="3">Alden NA</author>
                    <author order="4">Solares MJ</author>
                    <author order="5">Gilmore BL</author>
                    <author order="6">Pridham KJ</author>
                    <author order="7">Varano AC</author>
                    <author order="8">Sheng Z</author>
                    <author order="9">Alli E</author>
                    <author order="10">Kelly DF</author>
                    <title>Correcting errors in the BRCA1 warning system.</title>
                    <journal_abbreviation>DNA Repair (Amst.)</journal_abbreviation>
                    <volume>73</volume>
                    <first_page>120</first_page>
                    <last_page>128</last_page>
                    <year>2019</year>
                    <external_references type="PUBMED">30503669</external_references>
                    <external_references type="DOI">doi:10.1016/j.dnarep.2018.11.009</external_references>
                    <external_references type="ISSN">1568-7856</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-8926</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-8927</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Mutated p53-DNA assembly</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Mutated p53-DNA assembly</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <tissue>Breast</tissue>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.220</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Mutated p53-DNA assembly</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Human</organism>
                    <tissue>Breast</tissue>
                </natural_source>
                <enantiomer>DEXTRO</enantiomer>
                <sequence>
                    <string>MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKR</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.02</concentration>
                    <buffer>
                        <ph>7.2</ph>
                        <component>
                            <name>HEPES buffer</name>
                        </component>
                        <details>20 mM HEPES, pH 7.2, 150 mM NaCl, 10 mM CaCl2, 10 mM MgCl2</details>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>Uranyl Formate</material>
                        <details>1% uranyl formate</details>
                    </staining>
                    <grid>
                        <material>COPPER</material>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <atmosphere>AIR</atmosphere>
                            <pressure units="kPa">0.026</pressure>
                        </pretreatment>
                        <details>Grid was coated with amyl acetate followed by a layer of carbon prior to glow discharge.</details>
                    </grid>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI SPIRIT</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_defocus_min units="&#181;m">-1.5</nominal_defocus_min>
                    <nominal_magnification>68000.</nominal_magnification>
                    <specimen_holder_model>SIDE ENTRY, EUCENTRIC</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <basic />
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI EAGLE (2k x 2k)</film_or_detector_model>
                            <digitization_details>
                                <sampling_interval units="&#181;m">30.0</sampling_interval>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>92</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">5.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>747</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3b</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <startup_model type_of_model="PDB ENTRY">
                    <pdb_model>
                        <pdb_id>2AC0</pdb_id>
                    </pdb_model>
                    <details>Resolution filtered to ~50 Angstrom</details>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C2</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">15.5</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3b</version>
                        </software>
                    </software_list>
                    <details>Resolution acquired using the 'rmeasure' software.</details>
                    <number_images_used>747</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>OTHER</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3b</version>
                        </software>
                    </software_list>
                    <details>Empirical Bayesian approach</details>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>OTHER</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3b</version>
                        </software>
                    </software_list>
                    <details>Empirical Bayesian approach</details>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>1</number_classes>
                    <average_number_members_per_class>747.0</average_number_members_per_class>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.3b</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="4001">
        <file>emd_8926.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>100</col>
            <row>100</row>
            <sec>100</sec>
        </dimensions>
        <origin>
            <col>-50</col>
            <row>-50</row>
            <sec>-50</sec>
        </origin>
        <spacing>
            <x>100</x>
            <y>100</y>
            <z>100</z>
        </spacing>
        <cell>
            <a units="&#8491;">440.0</a>
            <b units="&#8491;">440.0</b>
            <c units="&#8491;">440.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.71772903</minimum>
            <maximum>3.0775418</maximum>
            <average>0.007128856</average>
            <std>0.084586255</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">4.4</x>
            <y units="&#8491;">4.4</y>
            <z units="&#8491;">4.4</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.686</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-8926::::</label>
        <annotation_details>p53 tetramer assembly</annotation_details>
    </map>
</emd>