<?xml version='1.0' encoding='utf-8'?>
<emd emdb_id="EMD-8801" version="3.0.1.3" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_3/emdb.xsd">
    <admin>
        <current_status>
            <date>2019-04-24</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-06-30</deposition>
            <header_release>2017-08-16</header_release>
            <map_release>2018-05-09</map_release>
            <update>2019-04-24</update>
        </key_dates>
        <title>Negative-stain EM reconstruction of H3v-47 Fab in complex with A/Minnesota/11/2010 H3N2v HA and FI6v Fab</title>
        <authors_list>
            <author>Nieusma T</author>
            <author>Ward AB</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Bangaru S</author>
                    <author order="2">Nieusma T</author>
                    <author order="3">Kose N</author>
                    <author order="4">Thornburg NJ</author>
                    <author order="5">Finn JA</author>
                    <author order="6">Kaplan BS</author>
                    <author order="7">King HG</author>
                    <author order="8">Singh V</author>
                    <author order="9">Lampley RM</author>
                    <author order="10">Sapparapu G</author>
                    <author order="11">Cisneros A</author>
                    <author order="12">Edwards KM</author>
                    <author order="13">Slaughter JC</author>
                    <author order="14">Edupuganti S</author>
                    <author order="15">Lai L</author>
                    <author order="16">Richt JA</author>
                    <author order="17">Webby RJ</author>
                    <author order="18">Ward AB</author>
                    <author order="19">Crowe JE</author>
                    <title>Recognition of influenza H3N2 variant virus by human neutralizing antibodies.</title>
                    <journal_abbreviation>JCI Insight</journal_abbreviation>
                    <volume>1</volume>
                    <year>2016</year>
                    <external_references type="PUBMED">27482543</external_references>
                    <external_references type="DOI">doi:10.1172/jci.insight.86673</external_references>
                    <external_references type="ISSN">2379-3708</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-8801</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>A/Minnesota/11/2010 H3N2v HA</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>A/Minnesota/11/2010 H3N2v HA</name>
                <parent>0</parent>
                <details>H3v-47 Fab in complex with A/Minnesota/11/2010 H3N2v HA and FI6v Fab</details>
                <natural_source database="NCBI">
                    <organism ncbi="11320">Influenza A virus</organism>
                    <strain>H3N2</strain>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                    <recombinant_cell>HEK Freestyle 293-F</recombinant_cell>
                    <recombinant_plasmid>pcDNA3.1(+)</recombinant_plasmid>
                </recombinant_expression>
                <molecular_weight>
                    <theoretical units="MDa">0.05</theoretical>
                </molecular_weight>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="2">
                <name>H3v-47 Fab</name>
                <parent>1</parent>
                <details>H3v-47 Fab in complex with A/Minnesota/11/2010 H3N2v HA and FI6v Fab</details>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                    <recombinant_cell>human hybridoma cell line</recombinant_cell>
                </recombinant_expression>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="3">
                <name>FI6v Fab</name>
                <parent>1</parent>
                <details>Negative-stain EM reconstruction of H3v-47 Fab in complex with A/Minnesota/11/2010 H3N2v HA and FI6v Fab</details>
                <natural_source database="NCBI">
                    <organism ncbi="11320">Human</organism>
                    <strain>H3N2</strain>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
                </recombinant_expression>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.0</ph>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>Uranyl formate</material>
                        <details>The complex was diluted to 2ug/ml, applied to freshly glow discharged 400 mesh carbon coated copper grids, and negatively stained with 2% uranyl formate.</details>
                    </staining>
                    <grid>
                        <model>EMS</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>CELLULOSE ACETATE</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <atmosphere>AIR</atmosphere>
                        </pretreatment>
                        <details>Carbon was evaporated upon grid prior to use.</details>
                    </grid>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI 12</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <c2_aperture_diameter units="µm">100.0</c2_aperture_diameter>
                    <nominal_cs units="mm">20.0</nominal_cs>
                    <nominal_defocus_min units="µm">1.0</nominal_defocus_min>
                    <calibrated_defocus_min units="µm">1.0</calibrated_defocus_min>
                    <nominal_defocus_max units="µm">1.0</nominal_defocus_max>
                    <calibrated_defocus_max units="µm">1.0</calibrated_defocus_max>
                    <nominal_magnification>52000.</nominal_magnification>
                    <calibrated_magnification>52000.</calibrated_magnification>
                    <alignment_procedure>
                        <basic />
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>TVIPS TEMCAM-F416 (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">24.7</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C3</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="Å">25.8</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN</name>
                            <version>1.1</version>
                        </software>
                    </software_list>
                    <number_images_used>23175</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>COMMON LINE</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing />
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="28312">
        <file>emd_8801.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>192</col>
            <row>192</row>
            <sec>192</sec>
        </dimensions>
        <origin>
            <col>-47</col>
            <row>-47</row>
            <sec>-47</sec>
        </origin>
        <spacing>
            <x>192</x>
            <y>192</y>
            <z>192</z>
        </spacing>
        <cell>
            <a units="Å">393.59998</a>
            <b units="Å">393.59998</b>
            <c units="Å">393.59998</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-5.113778</minimum>
            <maximum>15.210354000000001</maximum>
            <average>0.000000002790279</average>
            <std>0.90643466</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">2.05</x>
            <y units="Å">2.05</y>
            <z units="Å">2.05</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>3.6</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-8801::::</label>
        <annotation_details>Reconstruction of HA in complex with H3v-47 Fab and FI6v Fab.</annotation_details>
    </map>
</emd>