2024-03-13
REL
RCSB
RCSB
RCSB
2017-05-03
2017-06-21
2017-06-21
2024-03-13
Canadian Institutes of Health Research (CIHR)
MOP 81294
Canada
Canadian Institutes of Health Research (CIHR)
MOP-48370
Canada
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
R56AI103168
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
R21AI10571
United States
Natural Sciences and Engineering Research Council (NSERC, Canada)
RGPIN-2015-05372
Canada
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 1)
Zhao J
V-ATPase, SidK, rotational state 1, HYDROLASE
Zhao J
Beyrakhova K
Liu Y
Alvarez CP
Bueler SA
Xu L
Xu C
Boniecki MT
Kanelis V
Luo ZQ
Cygler M
Rubinstein JL
Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.
PLoS Pathog.
US
13
e1006394
e1006394
2017
28570695
doi:10.1371/journal.ppat.1006394
1553-7374
EMD-8725
other EM volume
EMD-8726
other EM volume
5vox
FULLOVERLAP
SidK
V-ATPase:SidK complex
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
V-ATPase
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
SidK
0
16
Legionella pneumophila subsp. pneumophila ATCC 43290
ATCC 43290
V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A
Saccharomyces cerevisiae
ATCC 204508 / S288c
0.067796508
3
LEVO
MAGAIENARKEIKRISLEDHAESEYGAIYSVSGPVVIAENMIGCAMYELVKVGHDNLVGEVIRIDGDKATIQVYEETAGL
TVGDPVLRTGKPLSVELGPGLMETIYDGIQRPLKAIKEESQSIYIPRGIDTPALDRTIKWQFTPGKFQVGDHISGGDIYG
SVFENSLISSHKILLPPRSRGTITWIAPAGEYTLDEKILEVEFDGKKSDFTLYHTWPVRVPRPVTEKLSADYPLLTGQRV
LDALFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMAEVLMEFPELYTEMSGTKEPIMKRTTLVA
NTSNMPVAAREASIYTGITLAEYFRDQGKNVSMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKAV
ALGSPDRTGSVSIVAAVSPAGGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTSVSYSKYTNVLNKFYDSNYPEFP
VLRDRMKEILSNAEELEQVVQLVGKSALSDSDKITLDVATLIKEDFLQQNGYSTYDAFCPIWKTFDMMRAFISYHDEAQK
AVANGANWSKLADSTGDVKHAVSSSKFFEPSRGEKEVHGEFEKLLSTMQERFAESTD
P17255
P17255
3.6.3.14
V-type proton ATPase subunit B
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.057815023
3
LEVO
MVLSDKELFAINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDGTVRQGQVLEIRGDRAIVQVF
EGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPIDNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDT
MNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRPTKDVHDGHEENFSIVFAAMGVNLETARFFKQDFEENGSLERTSL
FLNLANDPTIERIITPRLALTTAEYLAYQTERHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAG
RVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVS
NQLYAKYAIGKDAAAMKAVVGEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIYPKEMLNRISPKI
LDEFYDRARDDADEDEEDPDTRSSGKKKDASQEESLI
P16140
V-type proton ATPase subunit E
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.026508392999999998
3
LEVO
MSSAITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTI
ANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREY
GEKAQRAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKTRKFFD
P22203
V-type proton ATPase subunit G
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.012738705999999999
3
LEVO
MSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGEL
AEIKKIAEKKKDDVVKILIETVIKPSAEVHINAL
P48836
V-type proton ATPase subunit D
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.029235023
1
LEVO
MSGNREQVFPTRMTLGLMKTKLKGANQGYSLLKRKSEALTKRFRDITKRIDDAKQKMGRVMQTAAFSLAEVSYATGENIG
YQVQESVSTARFKVRARQENVSGVYLSQFESYIDPEINDFRLTGLGRGGQQVQRAKEIYSRAVETLVELASLQTAFIILD
EVIKVTNRRVNAIEHVIIPRTENTIAYINSELDELDREEFYRLKKVQEKKQNETAKLDAEMKLKRDRAEQDASEVAADEE
PQGETLVADQEDDVIF
P32610
V-type proton ATPase subunit F
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.013479169999999999
1
LEVO
MAEKRTLIAVIADEDTTTGLLLAGIGQITPETQEKNFFVYQEGKTTKEEITDKFNHFTEERDDIAILLINQHIAENIRAR
VDSFTNAFPAILEIPSKDHPYDPEKDSVLKRVRKLFGE
P39111
V-type proton ATPase subunit C
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.044241352
1
LEVO
MATALYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIG
KIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLA
AAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFK
KNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYG
LPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL
P31412
V-type proton ATPase subunit H
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.054482608999999994
1
LEVO
MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPL
IHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKL
VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI
QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP
TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIE
LLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK
P41807
V-type proton ATPase subunit d
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.039822484
1
LEVO
MEGVYFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLKLQLSSTDYGNFLSSVSSESLTTSLIQEYASSKLYHEF
NYIRDQSSGSTRKFMDYITYGYMIDNVALMITGTIHDRDKGEILQRCHPLGWFDTLPTLSVATDLESLYETVLVDTPLAP
YFKNCFDTAEELDDMNIEIIRNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEADRRSINIALNSLQSSDIDPDLKSD
LLPNIGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFLETGNLEDHFYQLEMELCRDAFTQQFAISTVWAWMKSKEQEV
RNITWIAECIAQNQRERINNYISVY
P32366
V-type proton ATPase subunit c''
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.022610640999999997
1
LEVO
MNKESKDDDMSLGKFSFSHFLYYLVLIVVIVYGLYKLFTGHGSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIF
ITGSSMIGAGVRAPRITTKNLISIIFCEVVAIYGLIIAIVFSSKLTVATAENMYSKSNLYTGYSLFWAGITVGASNLICG
IAVGITGATAAISDAADSALFVKILVIEIFGSILGLLGLIVGLLMAGKASEFQ
P23968
V-type proton ATPase subunit c'
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.017046361
1
LEVO
MSTQLASNIYAPLYAPFFGFAGCAAAMVLSCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLI
AGNLSPTEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNT
RGSE
P32842
V-type proton ATPase subunit c
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.016357501
8
LEVO
MTELCPVYAPFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQ
KQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVVC
P25515
V-type proton ATPase subunit a, vacuolar isoform
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.095625484
1
LEVO
MAEKEEAIFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIRRLDNVERQYRYFYSLLKKHD
IKLYEGDTDKYLDGSGELYVPPSGSVIDDYVRNASYLEERLIQMEDATDQIEVQKNDLEQYRFILQSGDEFFLKGDNTDS
TSYMDEDMIDANGENIAAAIGASVNYVTGVIARDKVATLEQILWRVLRGNLFFKTVEIEQPVYDVKTREYKHKNAFIVFS
HGDLIIKRIRKIAESLDANLYDVDSSNEGRSQQLAKVNKNLSDLYTVLKTTSTTLESELYAIAKELDSWFQDVTREKAIF
EILNKSNYDTNRKILIAEGWIPRDELATLQARLGEMIARLGIDVPSIIQVLDTNHTPPTFHRTNKFTAGFQSICDCYGIA
QYREINAGLPTIVTFPFMFAIMFGDMGHGFLMTLAALSLVLNEKKINKMKRGEIFDMAFTGRYIILLMGVFSMYTGFLYN
DIFSKTMTIFKSGWKWPDHWKKGESITATSVGTYPIGLDWAWHGTENALLFSNSYKMKLSILMGFIHMTYSYFFSLANHL
YFNSMIDIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVKDGKPAPGLLNMLINMFLSPGTIDDELYPHQAKVQVFLLLM
ALVCIPWLLLVKPLHFKFTHKKKSHEPLPSTEADASSEDLEAQQLISAMDADDAEEEEVGSGSHGEDFGDIMIHQVIHTI
EFCLNCVSHTASYLRLWALSLAHAQLSSVLWTMTIQIAFGFRGFVGVFMTVALFAMWFALTCAVLVLMEGTSAMLHSLRL
HWVESMSKFFVGEGLPYEPFAFEYKDMEVAVASASSSASS
P32563
V-type proton ATPase subunit e
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.008387065
1
LEVO
MSSFYTVVGVFIVVSAMSVLFWIMAPKNNQAVWRSTVILTLAMMFLMWAITFLCQLHPLVAPRRSDLRPEFAE
Q3E7B6
V-type proton ATPase subunit f
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.0046136779999999995
1
LEVO
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)
effector protein SidK
Legionella pneumophila subsp. pneumophila ATCC 43290
0.06549031999999999
3
Escherichia coli
LEVO
MSFIKVGIKMGGLTSEQYHSQVVGKIGYIARCMQTIDPENNLKKIREDYQDVLIWAEKNYRFEEILEASKSGKCPNDLDA
LSRRSLILLELLRLVSSISPFKMKLDLIESQYEKMKQHVNLWKSDYHVKLNQLNQLTDYLKNAAPTPKNNFLRAMTSVLQ
MQIAQYGITEDNEGINQLFKLGLHLLAMANEKIDEQYHLFKGYVKDQPEESPFEGILPAEDQKILVKTMIDYAMPKLSSK
VLQDKLSALSSSDVLTKTLLDSIDRIVKENEKLNALSKVKLGKFGLDIREIEVIYSQALKISPQDALQYTAQQCDAQLLS
MAFPDSQNYIIESISNKKVKTIAELIHSKEFIYQIIKTEVFKQVDPNEKIRLQAATELYQLLGRIMDKQINLFTKMNLEQ
INEYIQTKTKAILDKIPERVELLTFMGFEIPTFKGIETLMTDISHSQDNETLAIAQEFYTNIKNAKNQLLGDKLIEDITP
QDVEKFFNQCSQYGSEAAEKLADNRPVLTKIADILTAIARWAISLIGFNTPPQFLAPTRTCVDQVSDEITKIKLKLEDTL
GSLQKVQEESLSL
G8UUS6
singleParticle
particle
7.5
ETHANE-PROPANE
FEI TECNAI F20
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
200
GATAN K2 SUMMIT (4k x 4k)
1.2
1
6.8
FSC 0.143 CUT-OFF
23924
PROJECTION MATCHING
PROJECTION MATCHING