2020-11-25 REL RCSB RCSB RCSB 2017-05-03 2017-05-17 2017-05-24 2020-11-25 Natural Sciences and Engineering Research Council (Canada) RGPIN-2014-04686 Canada Domain identification of Penicillium Chrysogenum UGGT by labeling the protein with monovalent streptavidin Calles-Garcia D Yang M Vargas J Melero R Soya N Menade M Ito Y Lukacs G Kollman J Kozlov G Gehring K Calles-Garcia D Yang M Soya N Melero R Menade M Ito Y Vargas J Lukacs GL Kollman JM Kozlov G Gehring K Single-particle electron microscopy structure of UDP-glucose:glycoprotein glucosyltransferase suggests a selectivity mechanism for misfolded proteins. J. Biol. Chem. US 292 11499 11507 2017 28490633 doi:10.1074/jbc.M117.789495 1083-351X 0071 JBCHA3 EMD-8718 associated EM volume EMD-8719 other EM volume UDP-glucose:glycoprotein glucosyltransferase (UGGT) UDP-glucose:glycoprotein glucosyltransferase (UGGT) 0 1 Penicillium chrysogenum Spodoptera frugiperda SF9 0.175 singleParticle particle 0.0075 7.5 30.0 C4H11NO3 Tris(hydroxymethyl) Aminomethane 200.0 NaCl Sodium Chloride
Buffer was filtered through a 0.22um filter
 NEGATIVE uranyl formate
Freshly prepared uranyl formate at 0.75% was applied on the grids for 60s and then blotted
 EMS COPPER 400 CARBON CONTINUOUS 10.0 GLOW DISCHARGE OTHER FEI TECNAI F20 OTHER BRIGHT FIELD FIELD EMISSION GUN 200 100.0 2.0 62000.0 GATAN ULTRASCAN 4000 (4k x 4k) 20.0 1 EMAN
EMAN-e2initialmodel
 C1 33.0 FSC 0.143 CUT-OFF EMAN Scipion 32712 OTHER EMAN 2.0
EMAN-e2initialmodel
 OTHER EMAN RELION
EMAN and Relion
 10 EMAN Scipion emd_8718.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 140 140 140 -70 -70 -70 140 140 140 252.0 252.0 252.0 90.0 90.0 90.0 X Y Z -2.7388434 2.7282717 -0.0066098776 0.22511756 1.8 1.8 1.8 1.38 AUTHOR The negative stain EM map of Penicillium Chrysogenum UDP-glucose: glycoprotein glucosyltransferase (UGGT) emd_8718_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 140 140 140 -70 -70 -70 140 140 140 252.0 252.0 252.0 90.0 90.0 90.0 X Y Z -0.09871315 0.13300021 -0.00096039154 0.011690684 1.8 1.8 1.8 AUTHOR The negative stain EM map of Penicillium Chrysogenum UDP-glucose: glycoprotein glucosyltransferase (UGGT) with a biotinylation site inserted after lysine 261 emd_8718_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 140 140 140 -70 -70 -70 140 140 140 252.0 252.0 252.0 90.0 90.0 90.0 X Y Z -4.0563135 5.7971897 0.0030068026 0.37909988 1.8 1.8 1.8 AUTHOR The negative stain EM map of Penicillium Chrysogenum UDP-glucose: glycoprotein glucosyltransferase (UGGT) with a biotinylation site inserted after aspartic acid 1377