2024-11-06 REL RCSB RCSB RCSB 2017-03-31 2017-04-26 2017-04-26 2024-11-06 Canadian Institutes of Health Research (CIHR) MOP-81294 Canada Canadian Institutes of Health Research (CIHR) MOP-133408 Canada VCP like ATPase from T. acidophilum (VAT) - Substrate bound conformation Ripstein ZA Huang R AAA+, ATPase, Complex, unfoldase, HYDROLASE Ripstein ZA Huang R Augustyniak R Kay LE Rubinstein JL Structure of a AAA+ unfoldase in the process of unfolding substrate. Elife US 6 2017 28390173 doi:10.7554/eLife.25754 2050-084X EMD-8658 other EM volume
VCP like ATPase from T. acidophilum (VAT)-conformation 1
 5vca FULLOVERLAP Structural basis for substrate unfolding by the VCP like ATPase from T. Acidophilum Structural basis for substrate unfolding by the VCP like ATPase from T. Acidophilum 0 1
Stacked-ring state, ATPgS loaded N-terminal domain removed
Thermoplasma acidophilum 0.38 VCP-like ATPase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165 0.06299624599999999 6 Escherichia coli BL21(DE3) LEVO MEVSRISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIM SKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREEVQGEVERRVVAQLLTLMDGMKERGHVIVIGATNRIDAIDP ALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLGMSEEEKNKFLEEMADYTYGFVGADLAALVRESAMNALRRYLPEI DLDKPIPTEILEKMVVTEDDFKNALKSIEPSSLREVMVEVPNVHWDDIGGLEDVKREIKETVELPLLKPDVFKRLGIRPS KGFLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSD SGVTERIVNQLLTSLDGIEVMNGVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLN DIAQRTEGYVGADLENLCREAGMNAYRENPDATSVSQKNFLDALKTIRPSVDEEVIKFYRTLSETMSKSVSERRKQLQDQ GLYL O05209 singleParticle particle 20 7.5 Electron Microscopy Sciences M400 COPPER/RHODIUM 400 HOLEY ARRAY 30.0 ETHANE-PROPANE 100 277 FEI VITROBOT MARK III
Blot for 4 seconds before plunging.
FEI TECNAI 20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 30.0 2.0 1.7 2.9 25000.0 GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1-30 3 246 15.0 35.0 1 171381 Initial model generated by stochastic gradient descent algorithm in CryoSPARC 1 FOURIER SPACE 4.8 FSC 0.143 CUT-OFF cryoSPARC 0.2 75205 ANGULAR RECONSTITUTION cryoSPARC 0.2 ANGULAR RECONSTITUTION cryoSPARC 0.2 2 cryoSPARC 0.2 Ab intio with multiple classess emd_8659.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 371.2 371.2 371.2 90.0 90.0 90.0 X Y Z -0.41148973 0.7432196 -0.0001491764 0.027273158 1.45 1.45 1.45 0.137 AUTHOR VCP like ATPase from T. acidophilum - Substrate engaged state 5VC7 A 183-726 PDB experimental model FLEXIBLE FIT REAL