2024-03-13 REL RCSB RCSB RCSB 2017-03-17 2017-08-16 2017-08-16 2024-03-13 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM052586 United States CryoEM structure of the ERAD-associated E3 ubiquitin-protein ligase HRD1 Schoebel S Mi W Retrotranslocon, E3 ligase, ERAD, TRANSFERASE Schoebel S Mi W Stein A Ovchinnikov S Pavlovicz R DiMaio F Baker D Chambers MG Su H Li D Rapoport TA Liao M Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. Nature UK 548 352 355 2017 28682307 doi:10.1038/nature23314 1476-4687 0006 NATUAS EMD-8638 other EM volume
Cryo-EM map of the ERAD components Hrd1/Hrd3 dimer
 EMD-8639 other EM volume
CryoEM map of Hrd1 dimer with one Hrd3 molecule
 EMD-8642 other EM volume
Cryo-EM structure of ERAD-associated E3 ubiquitin-protein ligase component HRD3
 5v6p FULLOVERLAP Hrd1 dimer in Hrd1/Hrd3 complex Hrd1 dimer in Hrd1/Hrd3 complex 0 1 Saccharomyces cerevisiae S288c ERAD-associated E3 ubiquitin-protein ligase HRD1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.047866417999999994 2 Saccharomyces cerevisiae LEVO MVPENRRKQLAIFVVVTYLLTFYCVYSATKTSVSFLQVTLKLNEGFNLMVLSIFILLNSTLLWQLLTKLLFGELRLIEHE HIFERLPFTIINTLFMSSLFHERYFFTVAFFGLLLLYLKVFHWILKDRLEALLQSINDSTTMKTLIFSRFSFNLVLLAVV DYQIITRCISSIYTNQKSDIESTSLYLIQVMEFTMLLIDLLNLFLQTCLNFWEFYRSQQSLSNENNHIVHGDPTDENTVE SDQSQPVLNDDDDDDDDDRQFTGLEGKFMYEKAIDVFTRFLKTALHLSMLIPFRMPMMLLKDVVWDILALYQSGTSLWKI WRNNKQLDDTLVTVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICR LPVFDEK Q08109 2.3.2.27 singleParticle particle 0.8 7.5 Quantifoil R1.2/1.3 COPPER 400 GLOW DISCHARGE AIR ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 82.0 1
spider projection matching starting with a Gaussian density
 C2 4.1 FSC 0.143 CUT-OFF GeRelion 1.0 93609 PROJECTION MATCHING PROJECTION MATCHING emd_8637.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 -96 -96 -96 192 192 192 259.2 259.2 259.2 90.0 90.0 90.0 X Y Z -0.15739287 0.22296952 -0.000056658606 0.008797964 1.35 1.35 1.35 0.06 AUTHOR Hrd1 dimer map filtered to 4.1A and sharpened with -230 b-factor emd_8637_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 -96 -96 -96 192 192 192 259.2 259.2 259.2 90.0 90.0 90.0 X Y Z -0.053448595 0.101713404 -0.000056658606 0.0039756894 1.35 1.35 1.35 AUTHOR Hrd1 dimer map without filtering or amplitude modification