2018-02-14 REL RCSB RCSB RCSB 2017-02-19 2017-03-01 2018-01-24 2018-02-14 Herpes Simplex Virion Primary Enveloped Virion Fontana J Newcomb WW Winkler DC Cheng N Heymann JB Steven AC Newcomb WW Fontana J Winkler DC Cheng N Heymann JB Steven AC The Primary Enveloped Virion of Herpes Simplex Virus 1: Its Role in Nuclear Egress. MBio US 8 2017 28611252 doi:10.1128/mBio.00825-17 2150-7511 EMD-8607 associated EM volume Herpes simplex virus (type 1 / strain F) Herpes simplex virus (type 1 / strain F) 0
US3 null mutant, a gift from Dr. Richard Roller, Dept. of Microbiology and Immunology, Carver College of Medicine, Univ. of Iowa
Herpes simplex virus (type 1 / strain F) VIRION OTHER true false singleParticle particle 7.5
PBS
 ETHANE LEICA KF80
FEI/PHILIPS CM200FEG FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 120 GATAN ULTRASCAN 1000 (2k x 2k) 15.0 1
Images (2048 by 2048 pixels) were recorded using a CCD camera (Gatan) at a magnification of ~25,000x (giving a pixel size of 5.7 A) and processed using the Bsoft package (Heymann and Belnap, 2007) as previously described (McHugh et al., 2014).
123
PEV images of were picked manually, yielding a total of 123 particles.
Origins and orientations were determined by projection matching, using as a starting model a map of B capsids obtained by in vitro maturation of purified procapsids (Aksyuk et al., 2015).
 I 35.0 FSC 0.33 CUT-OFF
Reconstructions were calculated using breconstruct (from the Bsoft package), an algorithm that integrates images as central sections of Fourier space. An inverse Fourier transform was then calculated. Using an FSC cut-off of 0.3, the resolution of the reconstruction of C capsid-containing PEVs was estimated at ~3.5 nm for the entire particle and calculated (Cardone et al., 2013) at ~2 nm for the region around the capsid shell.
123 RANDOM ASSIGNMENT PROJECTION MATCHING emd_8607.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 337 337 337 -168 -168 -168 337 337 337 1907.4199 1907.4199 1907.4199 90.0 90.0 90.0 X Y Z -1032.047600000000102 724.766700000000014 0.21723418 87.348039999999997 5.66 5.66 5.66 200. EMDB Masked HSV-PEV map emd_8607_additional.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 337 337 337 -168 -168 -168 337 337 337 1907.4199 1907.4199 1907.4199 90.0 90.0 90.0 X Y Z -8.126359000000001 5.706825 -0.000000001385508 0.8085662 5.66 5.66 5.66 2. EMDB Non-masked HSV-PEV map