2024-03-13 REL RCSB RCSB RCSB 2016-11-23 2017-02-22 2017-08-09 2024-03-13 CRISPR RNA-guided surveillance complex Xiao Y Luo M CRISPR-Cas, Cascacde, surveillance, IMMUNE SYSTEM Xiao Y Luo M Hayes RP Kim J Ng S Ding F Liao M Ke A Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System. Cell 170 48 60.e11 2017 28666122 doi:10.1016/j.cell.2017.06.012 1097-4172 EMD-8477 other EM volume 5u0a FULLOVERLAP CRISPR RNA-guided surveillance complex CRISPR RNA-guided surveillance complex 0 1 2 3 4 5 6 7 8 Thermobifida fusca (strain YX) CRISPR-associated protein, Cse3 family Thermobifida fusca (strain YX) YX 0.026327938 1 Escherichia coli BL21(DE3) LEVO MTWLTKIVPDLRYRQTRADFRTAGNLHRKLIRLSSDLGEERIANPRQQSGLLFRIEETRNELYLLVQSHSPLRVDRLGPG YHGVQMRNLDPFLARLDKGSRVRYRIVASPTKRLGRSENNTQRLGLKEPPKKPREYTWALRGAAAEEWWHSRAAANGLEL LSTYAQTLDDVRDPGTADRSRKIRHPAVRFDGEAVISDVDAVRHAVLNGIGRGKSYGCGLLSLALIEEGEHG Q47PJ5 CRISPR-associated protein, Cse1 family Thermobifida fusca (strain YX) YX 0.061433297 1 Escherichia coli BL21(DE3) LEVO MLSVALCFLVGGAIPSPPSFDVTIAPWLIARSRDVLAAPEMLGLRDVLIRSHELSDVEIPLPPGAAVLWRILALITARIT GLDQPPNKNPKRKWQARRSQILSKGRLDPEAVDAYFADYSERFDLFHPERPWLQDPRLREECPKTSGVNKLAWGRTAGEN QVWLGGHHHDLDPHPLDSAEAVWHLLATLGYGPSGMCTARVVRGRSERNVTAGPLRGTVSYHPLGRTLFESLILNIPYPG TGAADLAFWEQPELNDPLGLPEESAGLAGILRLDHFRHAVLLHPSPDGSHVVDAWVTWAWRERNISPELDPYLIYQTSKE GRVYPRPAEAERAIWRDLDALLHYGEDGNYRPTILDNCTPLAQVPQEVLDSLRLRAFGFDQDGQARDKQWFTATTPAVLR WLADRETDDNENARIVRRITLARKAAEALGRRLEKACKEAWKESNSPSSTSSGTNAKTETGVGPWVQHGMSRYWAKAEPV FWNIVYDRPAQGYTPGMAGPGNAFNLVALAAYDEVTGPYCERPRVAKVVERHRSTLFSNWTPKQDKEAA Q47PJ1 CRISPR-associated protein, Cse4 family Thermobifida fusca (strain YX) YX 0.041043042999999994 6 Escherichia coli BL21(DE3) LEVO MTFVDIHAIQTLPYSNINRDDLGSPKTVVYGGKERTRVSSQSWKRAVRHEVEARLGDKAVRTRRIISEIAKRLRERGWDA DLADAGARQVVLSVGKKSGIKLEKEKDSEAPATSVLFYLPVPAIDELAAIADEHRDAVAKEAAKKTPKGILPADRITEVL KSRNVSVNLFGRMLAELPSTEVDGAVQFAHAFTVHGTTVEVDFFTAVDDIPKENDHGSGHMNAGQFSAGTFYRYANVNLD RLVENTGDAQTARTAVAEFLRAFLSTVPSGKQNATAAMTLPDLVHIAVRFDRPISFAPAFETALYGSDGYTLRACQELNN YAERLREVWPDDAIRGYATVENKTDLAALGERYDSYPALIDAMVAAAFEGERE Q47PJ3 Cse2 Thermobifida fusca (strain YX) YX 0.027446613 2 Escherichia coli BL21(DE3) LEVO MNSDYILQHADALVKRVSKLIVNEPAARAALRRGVGLAPEDPRMLAAHRVVAPYVPVPTDYDVDRRRAASLWDVHAVERA FYAVAAIMAAQPRSARDQEAEATEEQTGEPQDSEALTEPTPAEESSATKDGKPDRRPNLGVSLAQAVFDKGLNADSTEQR LHLIARQNLDGVHRHLPRLVLYLRSDQVHIDWGILIRDLARWGHTPRHVAREWVQDYHRTLETLTRQAEQKNKNNTTDEE AEAA Q47PJ2 crRNA Thermobifida fusca YX 0.019790793 1 AUGGACCGCCAGUGAUAAGUGGAAUGCCAUGUGGGCUGUCGUGAGCCCCACGCACGUGGGG Target Strand Thermobifida fusca YX 0.015251741 1 (DG)(DC)(DC)(DT)(DG)(DG)(DC)(DG)(DA)(DC)(DA)(DG)(DC)(DC)(DC)(DA)(DC)(DA)(DT)(DG) (DG)(DC)(DA)(DT)(DT)(DC)(DC)(DA)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DC)(DT)(DG)(DG)(DC) (DT)(DT)(DC)(DG)(DT)(DC)(DC)(DG)(DC)(DG) DNA CRISPR-associated protein, Cas5e family Thermobifida fusca (strain YX) YX 0.028279259999999997 1 Escherichia coli BL21(DE3) LEVO MSGFLLRLAGPMQSWGEHSMFGERDTLPYPSRSGLIGMFAAAQGVRRGDPLDRYKELKFTVRVDRPGVRLVDFHTIGGGL PKERTVPTAAGERRDPKKATIVTSRSYLADAVFTVAVTGPEADTIADALAAPYWQPYLGRRAFVPDPLLVLRRRVADPVR ELVEAVPLPHRRVEEDAATVLVDLIYEEGEYPDTRTLTVLNDVPLSFDSKSRRYSTRQIRVVPTEVPATLVAGPGRDYQN KLFTYVKQCAEEAA Q47PJ4 Nontarget Strand Thermobifida fusca YX 0.012076723 1 (DC)(DG)(DC)(DG)(DG)(DA)(DC)(DG)(DA)(DA)(DG)(DC)(DC)(DA)(DG)(DT)(DG)(DA)(DC)(DC) (DA)(DT)(DG)(DT)(DG)(DG)(DG)(DC)(DT)(DG)(DT)(DC)(DG)(DC)(DC)(DA)(DG)(DG)(DC) DNA singleParticle particle 0.8 7.5
10 mM HEPES pH 7.5, 150 mM NaCl, 5 mM DTT
 400 mesh Quantifoil holey carbon grid COPPER GLOW DISCHARGE ETHANE 85 GATAN CRYOPLUNGE 3 FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.0 1.0 21.0 31000.0 GATAN LIQUID NITROGEN NITROGEN 80.0 105.0 GATAN K2 SUMMIT (4k x 4k) COUNTING 1072 8.0 1 303301 C1 3.3 FSC 0.143 CUT-OFF RELION 1.4 131292 PROJECTION MATCHING SPIDER PROJECTION MATCHING RELION 1.4 6 RELION 1.4 emd_8478.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -256 0 0 256 256 256 314.88 314.88 314.88 90.0 90.0 90.0 X Y Z -0.29755154 0.47882083 0.000029935774 0.017093083 1.23 1.23 1.23 0.07 AUTHOR 3.3 angstrom EM map of Type 1-E Cascade in the full R-loop state from Thermobifida fusca OTHER