2025-09-03 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin pdbx_database_PDB_obs_spr _em_admin.last_update EXPERIMENTAL_PREPARATION em_sample_support _em_sample_support.grid_type AUTHOR_SUPPORTING_EVIDENCE pdbx_audit_support _pdbx_audit_support.funding_organization DERIVED_CALCULATIONS chem_comp_atom chem_comp_bond database_2 pdbx_struct_oper_list _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.type OBSOLETE REPOSITORY STRUCTURE_SUMMARY em_admin pdbx_database_PDB_obs_spr pdbx_database_status pdbx_entry_details _em_admin.last_update _pdbx_database_status.status_code RCSB RCSB 2016-11-15 2017-01-25 2017-05-31 2025-09-03 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI070771 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI103692 United States Cryo-Electron microscopy structure of species-D human adenovirus 26 Reddy V Yu X human adenovirus 26, hexon, penton base, minor proteins, VIRUS Yu X Veesler D Campbell MG Barry ME Asturias FJ Barry MA Reddy VS Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses. Sci Adv US 3 e1602670 e1602670 2017 28508067 doi:10.1126/sciadv.1602670 2375-2548 5tx1 FULLOVERLAP EMDB EMD-8471 associated EM volume
Cryo-Electron microscopy structure of species-D human adenovirus 26
 Human adenovirus 26 Human adenovirus 26 0 1 2 3 4 5 6 7 8 9 10 Human adenovirus 26 150 Adenovirus 950.0 25 VIRUS-LIKE PARTICLE SPECIES false false Hexon protein Human adenovirus 26 0.10721870299999998 12 LEVO MATPSMMPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREATTYLY KARFTLAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNPSQWETKEKQGTTGGVQQEKDVTKTFGVA ATGGINITNQGLLLGTDETAENGKKDIYADKTFQPEPQVGEENWQENEAFYGGRALKKDTKMKPCYGSFARPTNEKGGQA KFKPVNEGEQPKDLDIDFAYFDVPGGSPPAGGSGEEYKADIILYTENVNLETPDTHVVYKPGTSDNSSEINLVQQSMPNR PNYIGFRDNFVGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNSAVDSYDPDVRIIEN HGVEDELPNYCFPLNGTGTNSTYQGVKITNGNDGAEESEWEKDDAISRQNQICKGNVYAMEINLQANLWKSFLYSNVALY LPDSYKYTPANVKLPANTNTYEYMNGRVVAPSLVDAYINIGARWSLDPMDNVNPFNHPRNAGLRYRSMLLGNGRYVPFHI QVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRVDGASVRFDSVNLYATFFPMAHNTASTLEAMLRNDTHD QSFNDYLSAANMLYPIPAKATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKK VSIMFDSSVSWPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKDWFLVQMLSHYNIGYQGFHVPEGYKDRMYSFFRNFQP MSRQVVDEINYKDYKAVTLPFQHNNSGFTGYLAPTMRQGQPYPANFPYPLIGQTAVPSVTQKKFLCDRVMWRIPFSSNFM SMGALTDLGQNMLYANSAHALDMTFEVDPMDEPTLLYLLFEVFDVVRVHQPHRGVIEAVYLRTPFSAGNATT Q3S8B3 Penton Human adenovirus 26 0.056312038999999994 1 LEVO LEVPFVPPRYMAPTEGRNSIRYSELAPQYDTTRVYLVDNKSADIASLNYQNDHSNFLTTVVQNNDFTPAEASTQTINFDE RSRWGGDLKTILHTNMPNVNEYMFTSKFKARVMVSRKHPEGVVETDLSQDKLEYEWFEFTLPEGNFSETMTIDLMNNAIL ENYLQVGRQNGVLESDIGVKFDSRNFKLGWDPVTKLVMPGVYTYEAFHPDVVLLPGCGVDFTESRLSNLLGIRKKQPFQE GFRIMYEDLEGGNIPALLDVPKYLESKKKVEDETKNAAAATADTTTRGDTFATPAQETAADKKVEVLPIEKDESGRSYNL IQGTHDTLYRSWYLSYTYGDPEKGVQSWTLLTTPDVTCGAEQVYWSLPDLMQDPVTFRSTQQVSNYPVVGAELMPFRAKS FYNDLAVYSQLIRSYTSLTHVFNRFPDNQILCRPPAPTITTVSENVPALTDHGTLPLRSSIRGVQRVTVTDARRRTCPYV YKALGIVAPRVLSSRTF A4ZKL2 Fiber Human adenovirus 26 0.0022765259999999996 1 LEVO AKRLRVEDDFNPVYPYGYA A4ZKM1 PIIIa Human adenovirus 26 0.043148438 1 LEVO QQAPDPAIRAALQSQPSGLASDDWEAAMQRIMALTTRNPESFRQQPQANRLSAILEAVVPSRTNPTHEKVLAIVNALAEN KAIRPDEAGLVYNALLERVGRYNSTNVQSNLDRLVTDVREAVAQRERFKNEGLGSLVALNAFLATQPANVPRGQDDYTNF ISALRLMVTEVPQSEVYQSGPDYFFQTSRQGLQTVNLSQAFKNLRGLWGVQAPVGDRSTVSSLLTPNSRLLLLLIAPFTD SGSVNRNSYLGHLLTLYREAIGQAQVDEQTFQEITSVSRALGQNDTDSLRATLNFLLTNRQQKIPAQYALSAEEERILRY VQQSVGLFLMQEGATPSAALDMTARNMEPSMYAANRPFINKLMDYLHRAAAMNTDYFTNAILNPHWLP A4ZKL1 PIX Human adenovirus 26 0.013800376999999999 4 LEVO MNGTGGAFEGGLFSPYLTTRLPGWAGVRQNVMGSTVDGRPVLPANSSTMTYATVGNSSLDSTAAAAAAAAAMTATRLASS YMPSSGSSPSVPSSIIAEEKLLALLAELEALSRQLAALTQQVSELREQQQQQNK A4ZKK7 PVIII Human adenovirus 26 0.024633643 2 LEVO MSKEIPTPYMWSYQPQMGLAAGASQDYSTRMNWLSAGPSMISRVNGVRSHRNQILLEQAAVTSTPRAKLNPRNWPSTLVY QEIPGPTTVLLPRDALAEVRMTNSGVQLAGGASRCPLRPQSGIKTLVIRGRGTQLNDELVSSSIGLRPDGVFQLAGAGRS SFTPNQAYLTLQSSSSEPRSGGIGTLQFVEEFVPSVYFNPFSGSPGLYPDEFIPNFDAVREAVDGYD A4ZKM0 PVI Human adenovirus 26 0.003348683 9 LEVO DINFASLAPRHGTRPFMGTWNEIGTSQLNGG A4ZKL5 Unknown Human adenovirus 26 0.000869063 3 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) singleParticle particle 6.0 8.1
40 mM Tris, pH 8.1, 300 mM NaCl, 10 mM CaCl2
 C-flat COPPER 400 PLASMA CLEANING
20mA
 ETHANE 90 298 GATAN CRYOPLUNGE 3
Virus particles
 FEI TITAN KRIOS OTHER OTHER FIELD EMISSION GUN 300 70.0 2.7 0.8 22500.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 70.0 70.0 GATAN K2 SUMMIT (4k x 4k) COUNTING 2 2000 7.6 1.4 1 20000 CTFFIND3 3 PHASE FLIPPING ONLY 4CWU 1 I BACK PROJECTION 3.7 FSC 0.143 CUT-OFF FREALIGN 9.11 19000 PROJECTION MATCHING PROJECTION MATCHING 6 emd_8471.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1200 1200 1200 -600 -600 -600 1200 1200 1200 1571.9999 1571.9999 1571.9999 90.0 90.0 90.0 X Y Z -0.06903934 0.115228586 -0.001875943 0.005534527 1.31 1.31 1.31 0.02 EMDB species-D human adenovirus 26 RIGID BODY FIT REAL