<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-8419" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-07-18</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2016-10-04</deposition>
            <header_release>2016-11-16</header_release>
            <map_release>2017-02-22</map_release>
            <update>2018-07-18</update>
        </key_dates>
        <title>High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid</title>
        <authors_list>
            <author>Conway J</author>
            <author>Huet A</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Vernhes E</author>
                    <author order="2">Renouard M</author>
                    <author order="3">Gilquin B</author>
                    <author order="4">Cuniasse P</author>
                    <author order="5">Durand D</author>
                    <author order="6">England P</author>
                    <author order="7">Hoos S</author>
                    <author order="8">Huet A</author>
                    <author order="9">Conway JF</author>
                    <author order="10">Glukhov A</author>
                    <author order="11">Ksenzenko V</author>
                    <author order="12">Jacquet E</author>
                    <author order="13">Nhiri N</author>
                    <author order="14">Zinn-Justin S</author>
                    <author order="15">Boulanger P</author>
                    <title>High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid.</title>
                    <journal_abbreviation>Sci Rep</journal_abbreviation>
                    <country>UK</country>
                    <volume>7</volume>
                    <first_page>41662</first_page>
                    <last_page>41662</last_page>
                    <year>2017</year>
                    <external_references type="PUBMED">28165000</external_references>
                    <external_references type="DOI">doi:10.1038/srep41662</external_references>
                    <external_references type="ISSN">2045-2322</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-8419</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-8423</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>5tjt</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid</name>
        <supramolecule_list>
            <virus_supramolecule supramolecule_id="1">
                <name>Escherichia phage T5</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <sci_species_name ncbi="10726">Escherichia phage T5</sci_species_name>
                <natural_host database="NCBI">
                    <organism>E.Coli</organism>
                </natural_host>
                <virus_shell shell_id="1">
                    <name>expanded head</name>
                    <diameter units="&#8491;">900.0</diameter>
                    <triangulation>13</triangulation>
                </virus_shell>
                <virus_type>VIRUS-LIKE PARTICLE</virus_type>
                <virus_isolate>OTHER</virus_isolate>
                <virus_enveloped>false</virus_enveloped>
                <virus_empty>true</virus_empty>
            </virus_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">1</concentration>
                    <buffer>
                        <ph>7.6</ph>
                        <component>
                            <concentration units="mM">10.0</concentration>
                            <name>Tris</name>
                        </component>
                        <component>
                            <concentration units="mM">100.0</concentration>
                            <formula>NaCl</formula>
                        </component>
                        <component>
                            <concentration units="mM">1.0</concentration>
                            <formula>Ca2+</formula>
                        </component>
                        <component>
                            <concentration units="mM">1.0</concentration>
                            <formula>Mg</formula>
                        </component>
                    </buffer>
                    <grid>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE-PROPANE</cryogen_name>
                        <chamber_humidity units="percentage">90</chamber_humidity>
                        <chamber_temperature units="K">293</chamber_temperature>
                        <instrument>FEI VITROBOT MARK II</instrument>
                        <details />
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI POLARA 300</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.27</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">6.16</nominal_defocus_max>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <digitization_details />
                            <number_real_images>1939</number_real_images>
                            <average_exposure_time units="s">1.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/&#8491;^2">20.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <details>the images were binned by 2</details>
                <particle_selection>
                    <number_selected>2651</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>CTFFIND3</name>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>I</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">9.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>Auto3DEM</name>
                        </software>
                    </software_list>
                    <number_images_used>1856</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>COMMON LINE</type>
                    <software_list>
                        <software>
                            <name>Auto3dem (ppft)</name>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>COMMON LINE</type>
                    <software_list>
                        <software>
                            <name>Auto3dem (PO2R)</name>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="503007">
        <file>emd_8419.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>501</col>
            <row>501</row>
            <sec>501</sec>
        </dimensions>
        <origin>
            <col>-250</col>
            <row>-250</row>
            <sec>-250</sec>
        </origin>
        <spacing>
            <x>501</x>
            <y>501</y>
            <z>501</z>
        </spacing>
        <cell>
            <a units="&#8491;">1372.74</a>
            <b units="&#8491;">1372.74</b>
            <c units="&#8491;">1372.74</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-10.389001</minimum>
            <maximum>32.442999999999998</maximum>
            <average>-0.050304458</average>
            <std>2.5765135</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.74</x>
            <y units="&#8491;">2.74</y>
            <z units="&#8491;">2.74</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>10.</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::D_1000224336::::</label>
        <annotation_details>decorated empty expanded capsid of bacteriophage T5</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>