<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_9_2/emdb.xsd" version="3.0.9.2" emdb_id="EMD-8410">
    <admin>
        <current_status>
            <date>2024-03-13</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2016-10-03</deposition>
            <header_release>2016-11-16</header_release>
            <map_release>2017-01-11</map_release>
            <update>2024-03-13</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</funding_body>
                <code>GM43949</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>Howard Hughes Medical Institute (HHMI)</funding_body>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>Ca2+ bound aplysia Slo1</title>
        <authors_list>
            <author>MacKinnon R</author>
            <author>Tao X</author>
        </authors_list>
        <keywords>ion channel, K+ channel, Ca2+ bound, high conductance, MEMBRANE PROTEIN</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Tao X</author>
                    <author order="2">Hite RK</author>
                    <author order="3">MacKinnon R</author>
                    <title>Cryo-EM structure of the open high-conductance Ca(2+)-activated K(+) channel.</title>
                    <journal_abbreviation>Nature</journal_abbreviation>
                    <country>UK</country>
                    <volume>541</volume>
                    <first_page>46</first_page>
                    <last_page>51</last_page>
                    <year>2017</year>
                    <external_references type="PUBMED">27974795</external_references>
                    <external_references type="DOI">doi:10.1038/nature20608</external_references>
                    <external_references type="ISSN">1476-4687</external_references>
                    <external_references type="CSD">0006</external_references>
                    <external_references type="ASTM">NATUAS</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-8414</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>5tj6</pdb_id>
                <relationship>
                    <other>unknown</other>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>Ca2+ bound aplysia Slo1</name>
        <supramolecule_list>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name>Ca2+ bound aplysia Slo1</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="6500">Aplysia californica</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.4</theoretical>
                </molecular_weight>
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>High conductance calcium-activated potassium channel</name>
                <natural_source database="NCBI">
                    <organism ncbi="6500">Aplysia californica</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.120308</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7111">Trichoplusia ni</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MASSSSTSCEPGDRQWYSFLASSLVTFGSGLVVIIIYRIVLWLCCRKKKCIQVSNPVPTARTTSLDQKSFMKNSDPEIGW
MTEAKDWAGELISGQTTTGRILVGLVFLLSIASLIIYFIDASTNTSVETCLPWSSSTTQQVDLAFNVFFMIYFFIRFVAA
NDKLWFWVELFSFVDYFTIPPSFVAIYLDRNWLGLRFLRALRLMSIPDILTYLNVLKTSTLIRLVQLVVSFVSLWLTAAG
FLHLLENSGDPFFDFGNAQHLTYWECLYFLMVTMSTVGFGDIFATTVLGRTFVVIFIMIFIGLFASFIPEIAEILGKRQK
YGGSYKKERGKRHVVVCGYITFDSVSNFLKDFLHKDREDVDVEIVFLHKGLPGLELEGLLKRHFTQVEYFWGSVMDANDL
ERVKIQEADACLVLANKYCQDPDQEDAANIMRVISIKNYHSDIKVIVQLLQYHNKAYLLNIPSWDWKRGDDAVCVAELKL
GFIAQSCLAPGFSTLMANLFTMRSYKPTPEMSQWQTDYMRGTGMEMYTEYLSSAFNALTFPEAAELCFSKLKLLLLAIEV
RQEDTRESTLAINPGPKVKIENATQGFFIAESAEEVKRAFYYCKNCHANVSDVRQIKKCKCRPLAMFKKGAAAVLALQRT
PGLAVEPDGEANDKDKSRGTSTSKAVTSFPEKRKPQSRRKPSTTLKSKSPSEDSVPPPPPPVDEPRKFDSTGMFHWCPDR
PLNDCLQDRSQASASGLRNHVVVCLFADAASPLIGLRNLVMPLRASNFHYHELKPTIIVGNLDYLHREWKTLQNFPKLSI
LPGSPLNRANLRAVNINLCDMCVIVSAKDRNMEDPNLVDKEAILCSLNIKAMTFDDTMGLIQSSNFVPGGFSPLHENKRS
QAGANVPLITELANDSNVQFLDQDDDDDPDTELYMTQPFACGTAFAVSVLDSLMSTSYFNDNALTLIRTLITGGATPELE
QILAEGAGMRGGYCSPAVLANRDRCRVAQISLFDGPLAQFGQGGHYGELFVYALRHFGILCIGLYRFRDTNESVRSPSSK
RYVITNPPEDFPLLPTDQVYVLTYKQITNH</string>
                    <external_references type="UNIPROTKB">Q5QJC5</external_references>
                </sequence>
            </protein_or_peptide>
            <ligand macromolecule_id="2">
                <name>POTASSIUM ION</name>
                <molecular_weight>
                    <theoretical units="MDa">3.9098e-05</theoretical>
                </molecular_weight>
                <number_of_copies>5</number_of_copies>
                <formula>K</formula>
            </ligand>
            <ligand macromolecule_id="3">
                <name>MAGNESIUM ION</name>
                <molecular_weight>
                    <theoretical units="MDa">2.4305e-05</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <formula>MG</formula>
            </ligand>
            <ligand macromolecule_id="4">
                <name>CALCIUM ION</name>
                <molecular_weight>
                    <theoretical units="MDa">4.0078e-05</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <formula>CA</formula>
            </ligand>
            <ligand macromolecule_id="5">
                <name>(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate</name>
                <molecular_weight>
                    <theoretical units="MDa">0.0007490069999999999</theoretical>
                </molecular_weight>
                <number_of_copies>15</number_of_copies>
                <formula>PGW</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">7</concentration>
                    <buffer>
                        <ph>8.0</ph>
                        <component>
                            <concentration units="mM">20.0</concentration>
                            <formula>Tris</formula>
                            <name>Tris</name>
                        </component>
                        <component>
                            <concentration units="mM">320.0</concentration>
                            <formula>KCl</formula>
                            <name>KCl</name>
                        </component>
                        <component>
                            <concentration units="mM">10.0</concentration>
                            <formula>CaCl2</formula>
                            <name>CaCl2</name>
                        </component>
                        <component>
                            <concentration units="mM">10.0</concentration>
                            <formula>MgCl2</formula>
                            <name>MgCl2</name>
                        </component>
                        <component>
                            <concentration units="mM">20.0</concentration>
                            <formula>DTT</formula>
                            <name>DTT</name>
                        </component>
                        <component>
                            <concentration units="mM">2.0</concentration>
                            <formula>TCEP</formula>
                            <name>TCEP</name>
                        </component>
                        <component>
                            <concentration units="%">0.025</concentration>
                            <formula>DDM</formula>
                            <name>DDM</name>
                        </component>
                        <component>
                            <concentration units="%">0.005</concentration>
                            <formula>CHS</formula>
                            <name>CHS</name>
                        </component>
                    </buffer>
                    <grid>
                        <model>Quantifoil R1.2/1.3</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <time units="s">10</time>
                            <atmosphere>AIR</atmosphere>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">85</chamber_humidity>
                        <chamber_temperature units="K">293</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">1.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.5</nominal_defocus_max>
                    <nominal_magnification>22500.0</nominal_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <coma_free/>
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>SUPER-RESOLUTION</detector_mode>
                            <digitization_details>
                                <dimensions>
                                    <width units="pixel">7420</width>
                                    <height units="pixel">7676</height>
                                </dimensions>
                                <frames_per_image>1-50</frames_per_image>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>2000</number_real_images>
                            <average_exposure_time units="s">0.3</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">1.8</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>233000</number_selected>
                </particle_selection>
                <startup_model type_of_model="OTHER">
                    <details>An initial model generated from 2D class averages in EMAN2</details>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C4</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">3.5</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>FREALIGN</name>
                        </software>
                    </software_list>
                    <number_images_used>115000</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <software_list>
                        <software>
                            <name>FREALIGN</name>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="67109">
        <file>emd_8410.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>256</col>
            <row>256</row>
            <sec>256</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>256</x>
            <y>256</y>
            <z>256</z>
        </spacing>
        <cell>
            <a units="Å">332.8</a>
            <b units="Å">332.8</b>
            <c units="Å">332.8</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.018576425</minimum>
            <maximum>0.049764723</maximum>
            <average>-0.00023435285</average>
            <std>0.002291491</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.3</x>
            <y units="Å">1.3</y>
            <z units="Å">1.3</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.014</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::D_1000224169::::</label>
        <annotation_details>Mg and Ca-bound aplysia Slo1</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>AB INITIO MODEL</refinement_protocol>
                <refinement_space>RECIPROCAL</refinement_space>
                <overall_bvalue>100.0</overall_bvalue>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>
