2024-10-23 REL RCSB RCSB RCSB 2016-10-28 2016-11-16 2016-11-16 2024-10-23 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 2 P50 GM082545-06 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) HIVRAD P01 AI100148 United States Bill & Melinda Gates Foundation Collaboration for AIDS Vaccine Discovery Grant 1040753 United States Cryo-EM structure of a BG505 Env-sCD4-17b-8ANC195 complex Wang H Bjorkman PJ cryo-EM, HIV-1 Env, CD4, VIRAL PROTEIN Wang H Cohen AA Galimidi RP Gristick HB Jensen GJ Bjorkman PJ Cryo-EM structure of a CD4-bound open HIV-1 envelope trimer reveals structural rearrangements of the gp120 V1V2 loop. Proc.Natl.Acad.Sci.USA US 113 E7151 E7158 2016 27799557 doi:10.1073/pnas.1615939113 1091-6490 0040 PNASA6 5thr FULLOVERLAP BG505 SOSIP-sCD4-17b-8ANC195 complex BG505 SOSIP-sCD4-17b-8ANC195 complex 0 1 2 3 4 5 6 7 0.05 CD4 D1-D2 domain 1 3 Homo sapiens 17b Fab 1 4 5 Homo sapiens BG505 SOSIP trimer 1 1 2 Human immunodeficiency virus 1 8ANC195 G52K5 Fab 1 6 7 Homo sapiens BG505 SOSIP gp41 Human immunodeficiency virus 1 0.017146481999999998 3 Homo sapiens LEVO AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD Q2N0S6 BG505 SOSIP gp120 Human immunodeficiency virus 1 0.054064277 3 Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIIS LWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKE YRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEV MIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRK HFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQ AMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRR R Q2N0S6 T-cell surface glycoprotein CD4 Homo sapiens 0.021472349999999998 3 Spodoptera frugiperda LEVO KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD TYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCT VLQNQKKVEFKIDIVVLAFQKAIDGRHHHHHH P01730 17b Fab VL domain Homo sapiens 0.023399898 3 Homo sapiens LEVO DIVMTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQS EDFAVYYCQQYNNWPPRYTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG 17b Fab VH domain Homo sapiens 0.024457386999999997 3 Homo sapiens LEVO EVQLVESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVY LELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 8ANC195 G52K5 VH domain Homo sapiens 0.02612527 3 Homo sapiens LEVO QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPP ISSLEIKNLTSDDTAVYFCTTTSTYDKWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSKSTSGGTAALGCL VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHH HHHH 8ANC195 G52K5 VL domain Homo sapiens 0.023401984 3 Homo sapiens LEVO DIQMTQSPSTLSASIGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFSGSAAGTDFTLTIGNLQ AEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC singleParticle particle 8.0 ETHANE-PROPANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 3.5 35.0 1 EMD-3086 C3 FOURIER SPACE 8.9 FSC 0.143 CUT-OFF RELION 5175 RANDOM ASSIGNMENT RELION PROJECTION MATCHING RELION RELION emd_8407.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 390 390 390 0 0 0 390 390 390 319.8 319.8 319.8 90.0 90.0 90.0 X Y Z -0.008169234 0.016621148 0.00014300481 0.0013653535 0.82 0.82 0.82 0.0074 AUTHOR BG505 SOSIP in complex with sCD4, 17b Fab, and 8ANC195 Fab. RIGID BODY FIT
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