<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-8371" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-02-14</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2016-09-09</deposition>
            <header_release>2016-10-05</header_release>
            <map_release>2016-10-05</map_release>
            <update>2018-02-14</update>
        </key_dates>
        <title>Three-dimensional reconstruction of bat adenovirus C isolate 250-A</title>
        <authors_list>
            <author>Hackenbrack NM</author>
            <author>Hafenstein SL</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Hackenbrack N</author>
                    <author order="2">Rogers MB</author>
                    <author order="3">Ashley RE</author>
                    <author order="4">Keel MK</author>
                    <author order="5">Kubiski SV</author>
                    <author order="6">Bryan JA</author>
                    <author order="7">Ghedin E</author>
                    <author order="8">Holmes EC</author>
                    <author order="9">Hafenstein SL</author>
                    <author order="10">Allison AB</author>
                    <title>Evolution and Cryo-electron Microscopy Capsid Structure of a North American Bat Adenovirus and Its Relationship to Other Mastadenoviruses.</title>
                    <journal_abbreviation>J. Virol.</journal_abbreviation>
                    <country>US</country>
                    <volume>91</volume>
                    <year>2017</year>
                    <external_references type="PUBMED">27807242</external_references>
                    <external_references type="DOI">doi:10.1128/JVI.01504-16</external_references>
                    <external_references type="ISSN">1098-5514</external_references>
                    <external_references type="CSD">0825</external_references>
                    <external_references type="ASTM">JOVIAM</external_references>
                </journal_citation>
            </primary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author order="11">Schoehn G</author>
                    <author order="12">El Bakkouri M</author>
                    <author order="13">Fabry CM</author>
                    <author order="14">Billet O</author>
                    <author order="15">Estrozi LF</author>
                    <author order="16">Le L</author>
                    <author order="17">Curiel DT</author>
                    <author order="18">Kajava AV</author>
                    <author order="19">Ruigrok RW</author>
                    <author order="20">Kremer EJ</author>
                    <title>Three-dimensional structure of canine adenovirus serotype 2 capsid.</title>
                    <journal_abbreviation>J. Virol.</journal_abbreviation>
                    <country>US</country>
                    <volume>82</volume>
                    <first_page>3192</first_page>
                    <last_page>3203</last_page>
                    <year>2008</year>
                    <external_references type="PUBMED">18216088</external_references>
                    <external_references type="DOI">doi:10.1128/JVI.02393-07</external_references>
                    <external_references type="ISSN">1098-5514</external_references>
                    <external_references type="CSD">0825</external_references>
                    <external_references type="ASTM">JOVIAM</external_references>
                </journal_citation>
            </secondary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author order="21">Liu H</author>
                    <author order="22">Jin L</author>
                    <author order="23">Koh SB</author>
                    <author order="24">Atanasov I</author>
                    <author order="25">Schein S</author>
                    <author order="26">Wu L</author>
                    <author order="27">Zhou ZH</author>
                    <title>Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks.</title>
                    <journal_abbreviation>Science</journal_abbreviation>
                    <country>US</country>
                    <volume>329</volume>
                    <first_page>1038</first_page>
                    <last_page>1043</last_page>
                    <year>2010</year>
                    <external_references type="PUBMED">20798312</external_references>
                    <external_references type="DOI">doi:10.1126/science.1187433</external_references>
                    <external_references type="ISSN">1095-9203</external_references>
                    <external_references type="CSD">0038</external_references>
                    <external_references type="ASTM">SCIEAS</external_references>
                </journal_citation>
            </secondary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-1462</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>The surface map of canine adenovirus A serotype 2 (1462) was compared to the bat adenovirus 250-A structure</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-5172</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>The surface map of human adenovirus C serotype 5 (5172) was compared to the bat adenovirus 250-A structure</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-8371</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Bat adenovirus</name>
        <supramolecule_list>
            <virus_supramolecule supramolecule_id="1">
                <name>Bat adenovirus</name>
                <parent>0</parent>
                <details>Bat adenovirus C isolate 250-A was isolated from Corynorhinus rafinesquii at the Mammoth Cave National Park in Kentucky, USA</details>
                <sci_species_name ncbi="740971">Bat adenovirus</sci_species_name>
                <sci_species_strain>C</sci_species_strain>
                <natural_host database="NCBI">
                    <organism ncbi="27674">Plecotus rafinesquii</organism>
                </natural_host>
                <virus_type>VIRION</virus_type>
                <virus_isolate>SPECIES</virus_isolate>
                <virus_enveloped>false</virus_enveloped>
                <virus_empty>false</virus_empty>
            </virus_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                        <component>
                            <concentration units="mM">10.0</concentration>
                            <formula>Tris-HCl</formula>
                            <name>tris hydrochloride</name>
                        </component>
                        <component>
                            <concentration units="mM">100.0</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">10.0</concentration>
                            <formula>MgCl2</formula>
                            <name>magnesium chloride</name>
                        </component>
                    </buffer>
                    <grid>
                        <model>Quantifoil</model>
                        <material>COPPER</material>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                            <film_thickness units="nm">7.0</film_thickness>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <atmosphere>OTHER</atmosphere>
                            <pressure units="kPa">2e-06</pressure>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">95</chamber_humidity>
                        <instrument>GATAN CRYOPLUNGE 3</instrument>
                        <details />
                    </vitrification>
                    <details>Tissue from Corynorhinus rafinesquii was homogenized, clarified, and then used to infect Vero E6 cells. The supernatant was harvested and spun on a cesium chloride step gradient. Full particles were harvested, dialyzed, and concentrated.</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>JEOL 2100</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>OTHER</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <specimen_holder_model>GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER</specimen_holder_model>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                            <number_real_images>383</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">10.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>1592</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>Auto3DEM</name>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_reconstruction>
                    <algorithm>FOURIER SPACE</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">17.9</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <number_images_used>1109</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>RANDOM ASSIGNMENT</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>COMMON LINE</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="366936">
        <file>emd_8371.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>451</col>
            <row>451</row>
            <sec>451</sec>
        </dimensions>
        <origin>
            <col>-225</col>
            <row>-225</row>
            <sec>-225</sec>
        </origin>
        <spacing>
            <x>451</x>
            <y>451</y>
            <z>451</z>
        </spacing>
        <cell>
            <a units="&#8491;">1050.83</a>
            <b units="&#8491;">1050.83</b>
            <c units="&#8491;">1050.83</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-5.7268176</minimum>
            <maximum>6.1820703</maximum>
            <average>0.000000001399634</average>
            <std>1.</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.33</x>
            <y units="&#8491;">2.33</y>
            <z units="&#8491;">2.33</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>1.</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-8371::::</label>
        <annotation_details>The bat adenovirus isolate 250-A reconstruction by cryo-EM</annotation_details>
    </map>
</emd>