2016-11-30 REL RCSB RCSB RCSB 2016-08-29 2016-09-21 2016-11-02 2016-11-30 Cryo-EM structure of Polycystic Kidney Disease protein 2 (PKD2) Shen PS Yang X DeCaen PG Liu X Bulkley D Clapham DE Cao E Shen PS Yang X DeCaen PG Liu X Bulkley D Clapham DE Cao E The Structure of the Polycystic Kidney Disease Channel PKD2 in Lipid Nanodiscs. Cell 167 763 773.e11 2016 27768895 doi:10.1016/j.cell.2016.09.048 1097-4172 EMD-8354 other EM volume
longer construct (hPKD2:53-792) containing majority of N-terminus and C-terminal EF hand compared to EMD-8354
 EMD-8356 associated EM volume
Cryo-EM structure of Polycystic Kidney Disease protein 2 (PKD2)
 EMD-8355 other EM volume hPKD2:53-792 tetramer hPKD2:53-792 tetramer 0 1 Homo sapiens Homo sapiens HEK293S GnTI-/- pFastbac1 hPKD2:53-792 tetramer Homo sapiens Homo sapiens LEVO GAMGSFEIEMQRIRQAAARDPPAGAAASPSPPLSSCSRQAWSRDNPGFEAEEEEEEVEGEEGGMVVEMDVEWRPGSRRSAASSAVSSVGARSRGLGGYHGAGHPSGRRRRREDQGPPCPSPVGGGDPLHRHLPLEGQPPRVAWAERLVRGLRGLWGTRLMEESSTNREKYLKSVLRELVTYLLFLIVLCILTYGMMSSNVYYYTRMMSQLFLDTPVSKTEKTNFKTLSSMEDFWKFTEGSLLDGLYWKMQPSNQTEADNRSFIFYENLLLGVPRIRQLRVRNGSCSIPQDLRDEIKECYDVYSVSSEDRAPFGPRNGTAWIYTSEKDLNGSSHWGIIATYSGAGYYLDLSRTREETAAQVASLKKNVWLDRGTRATFIDFSVYNANINLFCVVRLLVEFPATGGVIPSWQFQPLKLIRYVTTFDFFLAACEIIFCFFIFYYVVEEILEIRIHKLHYFRSFWNCLDVVIVVLSVVAIGINIYRTSNVEVLLQFLEDQNTFPNFEHLAYWQIQFNNIAAVTVFFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMFFIIFLAYAQLAYLVFGTQVDDFSTFQECIFTQFRIILGDINFAEIEEANRVLGPIYFTTFVFFMFFILLNMFLAIINDTYSEVKSDLAQQKAEMELSDLIRKGYHKALVKLKLKKNTVDDISESLRQGGGKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEHQQMRDDLEKEREDLDLD singleParticle particle 2 7.4 10.0 C8H18N2O4S HEPES 150.0 NaCl sodium chloride Quantifoil COPPER 400 CARBON HOLEY ARRAY GLOW DISCHARGE ETHANE 80 277 FEI VITROBOT MARK II
blot for 7 seconds, -1 mm offset before plunging.
Single particles solubilized in amphipols. This sample was monodisperse.
 FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.0 29000. 41911. GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1 794 0.2 1.35 1
counting mode
289908
semi-automated particle picking
 CTFFIND4 EMD-8354 1 C4 FOURIER SPACE 4.0 FSC 0.143 CUT-OFF RELION 1.4 66960 PROJECTION MATCHING RELION 1.4 PROJECTION MATCHING RELION 1.4 emd_8356.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 229.056 229.056 229.056 90.0 90.0 90.0 X Y Z -0.18685144 0.29576066 0.0009442971 0.010233153 1.193 1.193 1.193 0.055 AUTHOR map of hPKD2:53-792 in amphipols generated from RELION auto-refinement and postprocessing