<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-8251" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2017-06-14</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2016-06-14</deposition>
            <header_release>2016-07-13</header_release>
            <map_release>2017-05-10</map_release>
            <update>2017-06-14</update>
        </key_dates>
        <title>Subtomogram-averaged map of in vitro assembled rubella virus capsid protein tetramer complex</title>
        <authors_list>
            <author>Mangala Prasad V</author>
            <author>Klose T</author>
            <author>Rossmann MG</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Mangala Prasad V</author>
                    <author order="2">Klose T</author>
                    <author order="3">Rossmann MG</author>
                    <title>Assembly, maturation and three-dimensional helical structure of the teratogenic rubella virus.</title>
                    <journal_abbreviation>PLoS Pathog.</journal_abbreviation>
                    <country>US</country>
                    <volume>13</volume>
                    <first_page>e1006377</first_page>
                    <last_page>e1006377</last_page>
                    <year>2017</year>
                    <external_references type="PUBMED">28575072</external_references>
                    <external_references type="DOI">doi:10.1371/journal.ppat.1006377</external_references>
                    <external_references type="ISSN">1553-7374</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-8251</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-8248</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-8249</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-8250</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Rubella virus capsid protein</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Rubella virus capsid protein</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="11043">Rubella virus strain M33</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
                    <recombinant_strain>Rosetta-2 (DE3)</recombinant_strain>
                    <recombinant_plasmid>pTXB1</recombinant_plasmid>
                </recombinant_expression>
                <molecular_weight>
                    <experimental units="MDa">0.256</experimental>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Rubella virus capsid protein</name>
                <natural_source database="NCBI">
                    <organism ncbi="11043">Rubella virus strain M33</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MEDLQKALEAQSRALRAELAAGASQSRRPRPPRQRDSSTSGDDSGRDSGGPRRRRGNRGRGQRRDWSRAPPPPEERQETRSQTPAPKPSRAPPQQPQPPRMQTGRGGSAPRPELGPPTNPFQAAVARGLRPPLHDPDTEAPTEACVTSWLWSEGEGAVFYRVDLHFTNLGTPPLDEDGRWDPALMYNPCGPEPPAHVVRAYNQPAGDVRGVWGKGERTYAEQDFRVGGTRWHRLLRMPVRGLDGDSAPLPPHTTERIETRSARHPWRIR</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
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            <method>subtomogramAveraging</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <subtomogram_averaging_preparation preparation_id="1">
                    <concentration units="mg/mL">1</concentration>
                    <buffer>
                        <ph>7.2</ph>
                        <component>
                            <concentration units="M">0.05</concentration>
                            <formula>C4H11NO3</formula>
                            <name>Tris</name>
                        </component>
                        <component>
                            <concentration units="M">0.5</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chloride</name>
                        </component>
                    </buffer>
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                        <model>Quantifoil R1.2/1.3</model>
                        <material>COPPER</material>
                        <mesh>200</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                        </support_film>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <details />
                    </vitrification>
                </subtomogram_averaging_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <subtomogram_averaging_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>SPOT SCAN</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_max units="&#181;m">0.005</nominal_defocus_max>
                    <nominal_magnification>11000.</nominal_magnification>
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                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>SUPER-RESOLUTION</detector_mode>
                            <average_electron_dose_per_image units="e/&#8491;^2">90.0</average_electron_dose_per_image>
                        </image_recording>
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                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
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                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>PEET</name>
                            <version>1.11.0</version>
                        </software>
                    </software_list>
                    <number_subtomograms_used>18</number_subtomograms_used>
                </final_reconstruction>
                <extraction>
                    <number_tomograms>15</number_tomograms>
                    <number_images_used>20</number_images_used>
                    <method>manual picking</method>
                    <software_list>
                        <software>
                            <name>IMOD/PEEt</name>
                            <version>4.8.40/1.11.0</version>
                        </software>
                    </software_list>
                </extraction>
                <ctf_correction>
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                        <software>
                            <name>IMOD</name>
                            <version>4.8.40</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_angle_assignment>
                    <type>OTHER</type>
                </final_angle_assignment>
            </subtomogram_averaging_processing>
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    </structure_determination_list>
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            <row>50</row>
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            <fast>X</fast>
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            <maximum>6.4853272</maximum>
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        <label>::::EMDATABANK.org::::EMD-8251::::</label>
        <annotation_details>Subtomogram-averaged map of in vitro assembled rubella virus capsid protein tetramer complex, unfiltered and unmasked</annotation_details>
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