2020-01-22 REL PDBj PDBj PDBj 2016-06-04 2016-08-10 2017-10-25 2020-01-22 The Natural Science Foundation of China 91430112 China The Shanghai Natural Science Foundation 13ZR1402400 China Cryo-EM structure of SpCas9-sgRNA-DNA ternary complex Li G Huang Q Huai C Huai C Li G Yao R Zhang Y Cao M Kong L Jia C Yuan H Chen H Lu D Huang Q Structural insights into DNA cleavage activation of CRISPR-Cas9 system Nat Commun UK 8 1375 1375 2017 29123204 doi:10.1038/s41467-017-01496-2 2041-1723 EMD-8236 associated EM volume
Cryo-EM structure of SpCas9-sgRNA-DNA ternary complex
 5y36 FULLOVERLAP SpCas9-sgRNA-target DNA ternay complex SpCas9-sgRNA-target DNA ternay complex 0
S. pyogenes Cas9(D10A, H840A) in complex with a 55-mer target DNA from the fumarylacetoacetate hydrolase (FAH) gene and the corresponding 98-nucleotide sgRNA
Streptococcus pyogenes 0.225 singleParticle particle 0.45 7.5 20.0 Tris trihydroxymethyl aminomethane 100.0 KCl potassium chloride 5.0 MgCl2 magnesium chloride 1.0 DTT dithiothreitol
20mM Tris-Cl (pH 7.5), 100mM KCl, 5mM MgCl2, 1mM DTT
 Quantifoil R1.2/1.3 COPPER 200 CARBON HOLEY PLASMA CLEANING OTHER ETHANE 100 289 FEI VITROBOT MARK IV
blot for 4 seconds before plunging.
SpCas9 protein, sgRNA, and target DNA were cultured at 37 degree centigrade to form a complex, and then monodisperased at 18 degree centigrade overnight.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.3 3.5 18000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) 3710 3838 592 10.0 1 66845 CTFFIND 3 4UN3
The structure was low-pass filtered to 60 Angstrom.
 C1 5.2 FSC 0.143 CUT-OFF RELION 1.3 57484 RANDOM ASSIGNMENT RELION 1.3 ANGULAR RECONSTITUTION RELION 1.3 emd_8236.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 140 140 140 0 0 0 140 140 140 182.0 182.0 182.0 90.0 90.0 90.0 X Y Z -0.025383996 0.08724286 0.0006787431 0.0060282876 1.3 1.3 1.3 0.0316 AUTHOR None 4OO8 A 3-1366 FLEXIBLE FIT Correlation coefficient REAL 80