2018-02-14 REL RCSB RCSB RCSB 2016-05-13 2016-07-20 2016-08-03 2018-02-14 Broadly neutralizing antibody PGDM14 in complex with BG505 SOSIP.664 Env trimer Lee JH Ward AB Sok D Pauthner M Briney B Lee JH Saye-Francisco KL Hsueh J Ramos A Le KM Jones M Jardine JG Bastidas R Sarkar A Liang CH Shivatare SS Wu CY Schief WR Wong CH Wilson IA Ward AB Zhu J Poignard P Burton DR A Prominent Site of Antibody Vulnerability on HIV Envelope Incorporates a Motif Associated with CCR5 Binding and Its Camouflaging Glycans. Immunity US 45 31 45 2016 27438765 doi:10.1016/j.immuni.2016.06.026 1074-7613 2048 IUNIEH EMD-8181 associated EM volume BG505 SOSIP.664 trimer in complex with PGDM14 Fab BG505 SOSIP.664 trimer in complex with PGDM14 Fab 0 1 2 3 Human immunodeficiency virus 1 BG505 Homo sapiens HEK293F pPPI4 BG505 SOSIP.664 soluble Env trimer Human immunodeficiency virus 1 BG505
This soluble Env sequence is derived from HIV-1 isolate BG505. It contains mutations to generate the N332 N-linked glycosylation site (T332N) and has stabilizing mutations A501C, I559P, and T605C. The construct is truncated at residue 664 of GP41.
Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRRAVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD Heavy chain Fab of broadly neutralizing antibody PGDM14 Homo sapiens Homo sapiens LEVO EVQLVESGGGLVKPGGSLRLSCTASGYYMSWIRQAPGKGLEWIAYISLRNNGYTHYADSVKGRFTMSRDYAKNLMFLQMNSLRVDDTAIYYCARVASGPNEDFYHDTEAAFDIWGQGTPVFVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD Light chain of broadly neutralizing antibody PGDM14 Homo sapiens Homo sapiens LEVO DIVMTQTTLSSPVTLGQAASISCKSSRNLVNSDGNTYLSWLHQR PGQPPSLLIYKISRRFSGVSDRFSGSGAGTDFTLRINRVEAADVGVYYCMQGSHWAWA FGQGTKLHVNRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC singleParticle particle 0.03 7.4 20.0 C4H11NO3 Tris 150.0 NaCl sodium chloride NEGATIVE 2% uranyl formate COPPER CARBON CONTINUOUS GLOW DISCHARGE FEI TECNAI 12 FLOOD BEAM BRIGHT FIELD LAB6 120 2.7 0.7 1.0 52000. 52000. SIDE ENTRY, EUCENTRIC NITROGEN 298.0 TVIPS TEMCAM-F416 (4k x 4k) 2 223 25.0 1
Common lines model generated from reference-free 2D class averages
 BACK PROJECTION 21.0 FSC 0.5 CUT-OFF SPARX sxali3d.py 8493 PROJECTION MATCHING PROJECTION MATCHING SPARX sxali3d.py emd_8181.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 0 0 0 160 160 160 328.0 328.0 328.0 90.0 90.0 90.0 X Y Z -0.01809887 0.055732537 0.00032249984 0.0048149377 2.05 2.05 2.05 0.02 AUTHOR Broadly neutralizing antibody PGDM14 in complex with BG505 SOSIP.664 Env trimer