2024-05-15 REL PDBe RCSB PDBe 2016-04-28 2016-05-25 2016-06-15 2024-05-15 Structure of S. cerevesiae mApe1 dodecamer Sachse C Bertipaglia C dodecamer, aminopeptidase, vacuole, cvt, Hydrolase Bertipaglia C Schneider S Jakobi AJ Tarafder AK Bykov YS Picco A Kukulski W Kosinski J Hagen WJ Ravichandran AC Wilmanns M Kaksonen M Briggs JA Sachse C Higher-order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle. Embo Rep. UK 17 1044 1060 2016 27266708 doi:10.15252/embr.201541960 1469-3178 5jm9 FULLOVERLAP Mature Aminopeptidase-1 dodecamer Mature Aminopeptidase-1 dodecamer 0 1 Saccharomyces cerevisiae 0.6 Vacuolar aminopeptidase 1 Saccharomyces cerevisiae 0.05716243 1 Escherichia coli BL21 LEVO MEEQREILEQLKKTLQMLTVEPSKNNQIANEEKEKKENENSWCILEHNYEDIAQEFIDFIYKNPTTYHVVSFFAELLDKH NFKYLSEKSNWQDSIGEDGGKFYTIRNGTNLSAFILGKNWRAEKGVGVIGSHVDALTVKLKPVSFKDTAEGYGRIAVAPY GGTLNELWLDRDLGIGGRLLYKKKGTNEIKSALVDSTPLPVCRIPSLAPHFGKPAEGPFDKEDQTIPVIGFPTPDEEGNE PPTDDEKKSPLFGKHCIHLLRYVAKLAGVEVSELIQMDLDLFDVQKGTIGGIGKHFLFAPRLDDRLCSFAAMIALICYAK DVNTEESDLFSTVTLYDNEEIGSLTRQGAKGGLLESVVERSSSAFTKKPVDLHTVWANSIILSADVNHLYNPNFPEVYLK NHFPVPNVGITLSLDPNGHMATDVVGTALVEELARRNGDKVQYFQIKNNSRSGGTIGPSLASQTGARTIDLGIAQLSMHS IRAATGSKDVGLGVKFFNGFFKHWRSVYDEFGEL P14904 3.4.11.22 singleParticle particle 7.5 50.0 HEPES 150.0 NaCl Sodium Chloride NEGATIVE Uranyl acetate
The sample was purified using a GraFix gradient.
 FEI/PHILIPS CM12 FLOOD BEAM BRIGHT FIELD LAB6 120 53000.0 SIDE ENTRY, EUCENTRIC TVIPS TEMCAM-F415 (4k x 4k) 40.0 1 5481
1. EMAN2: Gaussian blob 2. Manual assignment based on Euler angles related by tetrahedral symmetry. Both initial models converged to the same 24 Angstrom resolution structure after 20 cycles of iterative refinement with SPIDER.
 BACK PROJECTION 24.0 FSC 0.5 CUT-OFF SPIDER 19.09 5481 PROJECTION MATCHING EMAN 2.1 PROJECTION MATCHING SPIDER emd_8167.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 125 125 125 0 0 0 125 125 125 237.5 237.5 237.5 90.0 90.0 90.0 X Y Z -0.0060240254 0.068955064 0.004071423 0.010020978 1.9 1.9 1.9 0.023 AUTHOR None 4R8F PDB experimental model RIGID BODY FIT Cross-correlation coefficient