2024-05-15 REL PDBe RCSB PDBe 2016-02-16 2016-08-03 2016-08-03 2024-05-15 Alcohol oxidase from Pichia pastoris Vonck J Mills DJ alcohol oxidase peroxisome, oxidoreductase Vonck J Parcej DN Mills DJ Structure of Alcohol Oxidase from Pichia pastoris by Cryo-Electron Microscopy. Plos One US 11 e0159476 e0159476 2016 27458710 doi:10.1371/journal.pone.0159476 1932-6203 5i68 FULLOVERLAP alcohol oxidase alcohol oxidase 0 1 Komagataella pastoris 0.6 Alcohol oxidase 1 Komagataella pastoris 0.073992195 1 LEVO MAIPEEFDILVLGGGSSGSCIAGRLANLDHSLKVGLIEAGENNLNNPWVYLPGIYPRNMKLDSKTASFYTSNPSPHLNGR RAIVPCANVLGGGSSINFMMYTRGSASDYDDFQAEGWKTKDLLPLMKKTETYQRACNNPDIHGFEGPIKVSFGNYTYPVC QDFLRASESQGIPYVDDLEDLVTAHGAEHWLKWINRDTGRRSDSAHAFVHSTMRNHDNLYLICNTKVDKIIVEDGRAAAV RTVPSKPLNPKKPSHKIYRARKQIVLSCGTISSPLVLQRSGFGDPIKLRAAGVKPLVNLPGVGRNFQDHYCFFSPYRIKP QYESFDDFVRGDAEIQKRVFDQWYANGTGPLATNGIEAGVKIRPTPEELSQMDESFQEGYREYFEDKPDKPVMHYSIIAG FFGDHTKIPPGKYMTMFHFLEYPFSRGSIHITSPDPYAAPDFDPGFMNDERDMAPMVWAYKKSRETARRMDHFAGEVTSH HPLFPYSSEARALEMDLETSNAYGGPLNLSAGLAHGSWTQPLKKPTAKNEGHVTSNQVELHPDIEYDEEDDKAIENYIRE HTETTWHCLGTCSIGPREGSKIVKWGGVLDHRSNVYGVKGLKVGDLSVCPDNVGCNTYTTALLIGEKTATLVGEDLGYSG EALDMTVPQFKLGTYEKTGLARF F2QY27 1.1.3.13 MAGNESIUM ION 2.4305e-05 1 MG FLAVIN-ADENINE DINUCLEOTIDE 0.0007855499999999999 1 FAD singleParticle particle 0.7 7.5
Potassium phosphate buffer, 50 mM
 Quantifoil R2/2 COPPER 400 GLOW DISCHARGE AIR
The grids had been cleaned in chloroform for 2 hrs.
 ETHANE 70 283 FEI VITROBOT MARK I
blot for 11 seconds before plunging.
This sample was monodisperse
 JEOL 3200FSC FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 4.2 0.6 2.5 30000.0 43860.0 JEOL 3200FSC CRYOHOLDER NITROGEN In-column Omega Filter 0 20
Data was collected manually
GATAN K2 SUMMIT (4k x 4k) COUNTING 2-21 6.0 51.0 1
The movie frames were aligned prior to particle picking and the images were binned 3x.
56544 An initial model was created from negative stain images using EMAN2
D4 symmetry was applied.
 1 D4 3.37 FSC 0.143 CUT-OFF RELION 1.3
RELION was used for the reconstruction
49559 OTHER RELION 1.3
RELION
 OTHER RELION 1.3
RELION
 10 5600.0 RELION 1.3
87.6% of the particles ended up in one 3D class.
 emd_8072.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 218.88 218.88 218.88 90.0 90.0 90.0 X Y Z -0.22297949 0.37240782 -0.00008804758 0.022625932 1.14 1.14 1.14 0.052 AUTHOR None 3NNE A PDB experimental model 1GAL A PDB experimental model 3FIM B PDB experimental model AB INITIO MODEL REAL 147.0