2024-03-06 REL RCSB RCSB RCSB 2016-02-05 2016-03-09 2016-03-09 2024-03-06 Canadian Institutes of Health Research (CIHR) MOP 81294 Canada Thermus thermophilus V/A-ATPase, conformation 1 Schep DG Zhao J V/A-ATPase, V-ATPase, A-ATPase, Thermus thermophilus, rotary ATPase, membrane protein, HYDROLASE Schep DG Zhao J Rubinstein JL Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance. Proc.Natl.Acad.Sci.USA US 113 3245 3250 2016 26951669 doi:10.1073/pnas.1521990113 1091-6490 0040 PNASA6 EMD-8017 other EM volume
Thermus thermophilus V/A-ATPase map, rotational conformation 2
 EMD-8070 other EM volume
Saccharomyces cerevisiae V-ATPase map aligned and averaged to analyze the a subunit
 5gar FULLOVERLAP Intact Thermus thermophilus V/A-ATPase Intact Thermus thermophilus V/A-ATPase 0 1 2 3 4 5 6 7 8 9 10 Thermus thermophilus AH8 V-type ATP synthase alpha chain Thermus thermophilus AH8 0.063628902 3 LEVO MIQGVIQKIAGPAVIAKGMLGARMYDICKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGML NGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV KPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKTVTQQS LAKWSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSV ALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTL RIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAE RLVIEVGRIIREDFLQQNAYHEVDAYCSMKKAYGIMKMILAFYKEAEAAIKRGVSIDEILQLPVLERIGRARYVSEEEFP AYFEEAMKEIQGAFKAL Q56403 3.6.3.14 V-type ATP synthase beta chain Thermus thermophilus AH8 0.05085073799999999 3 LEVO EYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSK EMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQ IARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLA FEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIP DLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTE NDRRYLQFADAFERFFINQGQQNRSIEESLQIAWALLSMLPQGELKRISKDHIGKYY Q72J73 V-type ATP synthase subunit E Thermus thermophilus AH8 0.020481418 2 LEVO KLEAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEE VRRRVREALEALPQKPEWPEVVRKLALEALEALPGAKALVANPEDLPHLEAMARERGVELQAEPALRLGVRAVGAEGKTQ VENSLLARMDRAWDAMSSKVAQALWG P74901 V-type ATPase subunit G Thermus thermophilus AH8 0.011752550999999998 2 LEVO GMGGLGLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARYRERAEAE AKAVREKAMARLDEAVALVLKEVLP Q72J66 V-type ATP synthase subunit D Thermus thermophilus AH8 0.023350973 1 LEVO SQVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAAL GVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRRV NALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEAREAEEEGG Q72J74 V-type ATP synthase subunit F Thermus thermophilus AH8 0.010824321 1 LEVO MAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLKEA FQGHDVEGYMRELVRKTIGF P74903 V-type ATP synthase subunit C Thermus thermophilus AH8 0.03596857 1 LEVO MADDFAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEA REAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQD LARVEALLAKRFFEDVAKAAKGLDQPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAV LDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEV VCP P74902 Archaeal/vacuolar-type H+-ATPase subunit I Thermus thermophilus AH8 0.07227245299999999 1 LEVO MIAPMEKLVLAGPKGRAKELLQSLQQAGVVHLETLRPEALSAYQLSPEERAELRRWEAVSAGAEHTLSLLGLEAEPARPF PEGLEAAEKALSPIQAHAEGLTRQKQELEEELALAQAYLEPLERLAALAHGLDKSPFLRVIPFLLTEKELPLVEEALRKA LEDRYLLAHEAYAGGVPALVVVHRKEVDQAKAALSRAGVAELRLPGALGELPLSEAARRLKERAEAAPRELSEVRQHLAK LARESASTLQSLWTRAQDEVARLKALEELASGRFGFALLGYVPVKAKPKVEEALARHKENVVYAFEPVDEHHEADRIPVV LDNPPWVKPFELLVSFLNTPKYGTFDPTPVVPIFFPFWFGMIVGDIGYALLFYLVGRWLSGYVKRNEPLVIDLFALKLKP PVLAKLVYILNWMVFWTVVWGLIYGEFFGTFLEHLGVFGTPEHPGLIPILIHRIDTAKTANLLILLSVAFGVVMVFAGLI LRAYLGLKHRHMAHFWEGVGYLGGLLGILALAASYLGNLQAGWLSALMYLGFGVFLLSVVMSSIWLMIPEIFTQAGHILS HIRIYAVGAAGGILAGLLTDVGFAMAERLGLIGVLLGIVVAGVLHLLILLLTTLGHMLQPIRLIWVEFFTKFGFYEENGR PYRPFKSVRETQ H9ZQR4 Vacuolar type ATP synthase subunit Thermus thermophilus AH8 0.009841714 12 LEVO MKKLLVTVLLAVFGALAFAAEEAAASGGLDRGLIAVGMGLAVGLAALGTGVAQARIGAAGVGAIAEDRSNFGTALIFLLL PETLVIFGLLIAFILNGRL P74900 singleParticle particle 7 8.0 Homemade nanofabricated COPPER/RHODIUM 400 CARBON HOLEY ARRAY GLOW DISCHARGE AIR
Homemade nanofabricated 400 mesh copper/rhodium grid
 ETHANE-PROPANE 100 277 FEI VITROBOT MARK III
Plunged into liquid ethane/propane (FEI VITROBOT MARK III)..
FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 30.0 2.0 1.0 6.0 34483.0 GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1-30 12 15.0 35.7 1 EMD-5335
Low-pass filtered to 40 Angstrom resolution
 C1 6.4 FSC 0.143 CUT-OFF RELION 1.3 197178 PROJECTION MATCHING RELION 1.3 PROJECTION MATCHING RELION 1.3
Individual particle motion correction with alignparts_lmbfgs
 emd_8016.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 371.2 371.2 371.2 90.0 90.0 90.0 X Y Z -0.046784814 0.15198706 0.0010351237 0.0065495404 1.45 1.45 1.45 0.0382 AUTHOR None