2024-05-15 REL PDBe RCSB PDBe 2015-12-15 2016-02-03 2016-02-03 2024-05-15 Medical Research Council (United Kingdom) United Kingdom Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP Nguyen THD Galej WP Transcription, pre-mRNA splicing, snRNP, GTPase, U5 snRNA, Prp8, spliceosome Nguyen THD Galej WP Bai XC Oubridge C Scheres SHW Newman AJ Nagai K Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Angstrom resolution Nature UK 530 298 302 2016 26829225 doi:10.1038/nature16940 1476-4687 0006 NATUAS Nguyen THD Galej W Bai XC Savva CG Newman AJ Scheres SHW Nagai K The architecture of the spliceosomal U4/U6.U5 tri-snRNP. Nature UK 523 47 52 2015 26106855 doi:10.1038/nature14548 1476-4687 0006 NATUAS 5gam FULLOVERLAP Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP 0 1 2 3 4 5 6 7 8 9 10 11 12 Saccharomyces cerevisiae BCY123 0.35 U5 snRNA Saccharomyces cerevisiae BCY123 0.057138711
Short form of U5 snRNA (179 nt)
1 AAGCAGCUUUACAGAUCAAUGGCGGAGGGAGGUCAACAUCAAGAACUGUGGGCCUUUUAUUGCCUAUAGAACUUAUAACG AACAUGGUUCUUGCCUUUUACCAGAACCAUCCGGGUGUUGUCUCCAUAGAAACAGGUAAAGCUGUCCGUUACUGUGGGCU UGCCAUAUUUUUUGGAAC CP011085.1 Pre-mRNA-splicing factor 8 Saccharomyces cerevisiae BCY123 0.085826102 1 LEVO MSGLPPPPPGFEEDSDLALPPPPPPPPGYEIEELDNPMVPSSVNEDTFLPPPPPPPSNFEINAEEIVDFTLPPPPPPPGL DELETKAEKKVELHGKRKLDIGKDTFVTRKSRKRAKKMTKKAKRSNLYTPKAEMPPEHLRKIINTHSDMASKMYNTDKKA FLGALKYLPHAILKLLENMPHPWEQAKEVKVLYHTSGAITFVNETPRVIEPVYTAQWSATWIAMRREKRDRTHFKRMRFP PFDDDEPPLSYEQHIENIEPLDPINLPLDSQDDEYVKDWLYDSRPLEEDSKKVNGTSYKKWSFDLPEMSNLYRLSTPLRD EVTDKNYYYLFDKKSFFNGKALNNAIPGGPKFEPLYPREEEEDYNEFNSIDRVIFRVPIRSEYKVAFPHLYNSRPRSVRI PWYNNPVSCIIQNDEEYDTPALFFDPSLNPIPHFIDNNSSLNVSNTKENGDFTLPEDFAPLLAEEEELILPNTKDAMSLY HSPFPFNRTKGKMVRAQDVALAKKWFLQHPDEEYPVKVKVSYQKLLKNYVLNELHPTLPTNHNKTKLLKSLKNTKYFQQT TIDWVEAGLQLCRQGHNMLNLLIHRKGLTYLHLDYNFNLKPTKTLTTKERKKSRLGNSFHLMRELLKMMKLIVDTHVQFR LGNVDAFQLADGIHYILNHIGQLTGIYRYKYKVMHQIRACKDLKHIIYYKFNKNLGKGPGCGFWQPAWRVWLNFLRGTIP LLERYIGNLITRQFE P33334 Pre-mRNA-splicing factor SNU114 Saccharomyces cerevisiae BCY123 0.114132086
Full length Snu114
1 LEVO MEGDDLFDEFGNLIGVDPFDSDEEESVLDEQEQYQTNTFEGSGNNNEIESRQLTSLGSKKELGISLEHPYGKEVEVLMET KNTQSPQTPLVEPVTERTKLQEHTIFTQLKKNIPKTRYNRDYMLSMANIPERIINVGVIGPLHSGKTSLMDLLVIDSHKR IPDMSKNVELGWKPLRYLDNLKQEIDRGLSIKLNGSTLLCTDLESKSRMINFLDAPGHVNFMDETAVALAASDLVLIVID VVEGVTFVVEQLIKQSIKNNVAMCFVINKLDRLILDLKLPPMDAYLKLNHIIANINSFTKGNVFSPIDNNIIFASTKLGF TFTIKEFVSYYYAHSIPSSKIDDFTTRLWGSVYYHKGNFRTKPFENVEKYPTFVEFILIPLYKIFSYALSMEKDKLKNLL RSNFRVNLSQEALQYDPQPFLKHVLQLIFRQQTGLVDAITRCYQPFELFDNKTAHLSIPGKSTPEGTLWAHVLKTVDYGG AEWSLVRIYSGLLKRGDTVRILDTSQSESRQKRQLHDISKTETSNEDEDSKTETPSCEVEEIGLLGGRYVYPVHEAHKGQ IVLIKGISSAYIKSATLYSVKSKEDMKQLKFFKPLDYITEAVFKIVLQPLLPRELPKLLDALNKISKYYPGVIIKVEESG EHVILGNGELYMDCLLYDLRASYAKIEIKISDPLTVFSESCSNESFASIPVSNSISRLGEENLPGLSISVAAEPMDSKMI QDLSRNTLGKGQNCLDIDGIMDNPRKLSKILRTEYGWDSLASRNVWSFYNGNVLINDTLPDEISPELLSKYKEQIIQGFY WAVKEGPLAEEPIYGVQYKLLSISVPSDVNIDVMKSQIIPLMKKACYVGLLTAIPILLEPIYEVDITVHAPLLPIVEELM KKRRGSRIYKTIKVAGTPLLEVRGQVPVIESAGFETDLRLSTNGLGMCQLYFWHKIWRKVPGDVLDKDAFIPKLKPAPIN SLSRDFVMKTRRRKGISTGGFMSNDGPTLEKYISAELYAQLRENGLVP P36048 U6 snRNA, 5' end Saccharomyces cerevisiae BCY123 0.009928893
The 5' end 31 nucleotides of U6 snRNA
1 GUUCGCGAAGUAACCCUUCGUGGACAUUUGG Small nuclear ribonucleoprotein-associated protein B Saccharomyces cerevisiae BCY123 0.02242699
The SmB protein from the U5 snRNP Sm protein ring.
1 LEVO MSKIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSKDGTTLNIKVEKR VLGLTILRGEQILSTVVEDKPLLSKKERLVRDKKEKKQAQKQTKLRKEKEKKPGKIAKPNTANAKHTSSNSREIAQPSSS RYNGGNDNIGANRSRFNNEAPPQTRKFQPPPGFKRK P40018 Small nuclear ribonucleoprotein E Saccharomyces cerevisiae BCY123 0.010385097999999999
The SmE protein from the U5 snRNP Sm protein ring.
1 LEVO MSNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKI LLKGDNITLITSAD Q12330 Small nuclear ribonucleoprotein F Saccharomyces cerevisiae BCY123 0.009669945
The SmF protein from the U5 snRNP Sm protein ring.
1 LEVO MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLY IRELPN P54999 Small nuclear ribonucleoprotein G Saccharomyces cerevisiae BCY123 0.008490808999999998
The SmG protein from the U5 snRNP Sm protein ring.
1 LEVO MVSTPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTVIRGNSIISLEALDAI P40204 Unknown polypeptide Saccharomyces cerevisiae BCY123 0.001549902 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK) Small nuclear ribonucleoprotein Sm D3 Saccharomyces cerevisiae BCY123 0.011240138999999998
The SmD3 protein from the U5 snRNP Sm protein ring.
1 LEVO MTMNGIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKN APLFKKNSSRPMPPIRGPKRR P43321 Small nuclear ribonucleoprotein Sm D1 Saccharomyces cerevisiae BCY123 0.016296798
The SmD1 protein from the U5 snRNP Sm protein ring.
1 LEVO MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIA SLQYINIRGNTIRQIILPDSLNLDSLLVDQKQLNSLRRSGQIANDPSKKRRRDFGAPANKRPRRGL Q02260 Small nuclear ribonucleoprotein Sm D2 Saccharomyces cerevisiae BCY123 0.012876066
The SmD2 protein from the U5 snRNP Sm protein ring.
1 LEVO MSSQIIDRPKHELSRAELEELEEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKK GKNVINRERFISKLFLRGDSVIVVLKTPVE Q06217 GUANOSINE-5'-TRIPHOSPHATE 0.0005231799999999999 1 GTP singleParticle particle 0.2 7.9 20.0 Hepes.KOH 150.0 KCl potassium chloride 1.0 Mg(CH3COO)2 magnesium acetate 1.0 DTT Quantifoil R1.2/1.3 COPPER 400 CARBON CONTINUOUS 6.0 GLOW DISCHARGE OTHER
Grids are made of holey carbon, carbon-coated and glow discharged in N-amylamine.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.0 0.5 3.5 81000.0 35714.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1-20 2477 16.0 38.0 1 473827 EMD-2966
Startup model was 60 Angstrom low-pass filtered.
 1 C1 3.7 FSC 0.143 CUT-OFF RELION 140155 OTHER RELION OTHER RELION emd_8011.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 543.39996 543.39996 543.39996 90.0 90.0 90.0 X Y Z -0.07631316 0.19373968 -0.0002308518 0.0031405948 1.43 1.43 1.43 0.012 ANNOTATOR RECIPROCAL