2024-03-06 REL RCSB RCSB RCSB 2016-01-15 2016-02-17 2016-02-17 2024-03-06 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) P41GM103832 United States National Institutes of Health/National Eye Institute (NIH/NEI) PN2EY016525 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM079429 United States Resolution and Probabilistic Structural Models of Subcomponents Derived from CryoEM Maps of Mature P22 Bacteriophage Pintilie G Chen DH virion, portal, tailspike, adhesin, VIRAL PROTEIN Pintilie G Chen DH Haase-Pettingell CA King JA Chiu W Resolution and Probabilistic Models of Components in CryoEM Maps of Mature P22 Bacteriophage. Biophys.J. US 110 827 839 2016 26743049 doi:10.1016/j.bpj.2015.11.3522 1542-0086 0030 BIOJAU EMD-5348 other EM volume
Mature P22 bacteriophage asymmetric reconstruction
 5gai FULLOVERLAP Enterobacteria phage P22 Enterobacteria phage P22 0 1 2 3 Enterobacteria phage P22 13-am H101/C17 Salmonella enterica subsp. enterica serovar Typhimurium LT2 50.7 gp5 710.0 7 VIRION STRAIN false false Portal protein Enterobacteria phage P22 0.08239790599999999 12 Escherichia coli LEVO ENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDDWLSQYTTLQYRGQFDVVRPVVRKLVSEMRQNPIDVLYRPKD GARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQVIRREPIHSACSHVIWDSNSKL MDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEFYEVVEKKETAFIYQDPVTGEPV SYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVPVFGEWGFVEDKEVYEGVVRLTK DGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDENSGDLPTQPLAYYENPEVPQANAYM LEAATSAVKEVATLGVDTEAVNGGQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLED GSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTDVGPSFQSMKQQNRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKG VEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVEAQNQ LNAARIAEIFNNMDLSKQSEFREFLKTVASFQQDRSEDARANAELLLKGDEQTHKQRMDIANILQSQRQNQPSGSVAETP Q P26744 Peptidoglycan hydrolase gp4 Enterobacteria phage P22 0.015957812999999998 12 Escherichia coli LEVO TKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIITGYVFSDDENPPAEGDDHGLRSSAVSAVF HNLACRIAPDYALEATAKIIATAKYGKELLYKQTAISRAKRAPYPSRMPTGSGNSFPNLNEWHYFP P26746 Tail fiber protein Enterobacteria phage P22 0.07136187499999999 3 Escherichia coli LEVO ANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKIVTV QGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKV LTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPG IETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGG RTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNP ELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKD FQANQIYISGACRVNGLRLIGIRSTDGQGLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRI HKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNS TSLKALVKKPNGELVRLTLATL P12528 3.2.1.- singleParticle particle 7.6 25 mM MgCl2 ETHANE 90 120 FEI VITROBOT MARK III
Blot for 2 seconds before plunging..
JEOL 3200FSC FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 4.1 1.0 1.0 4.0 4.0 40000.0 70600.0 JEOL 3200FSC CRYOHOLDER NITROGEN 100.0 102.0 In-column Omega Filter 0 20 GATAN ULTRASCAN 10000 (10k x 10k) 5000 5000 1130 25.0
Every image was 2x hardware binned from Gatan 10kx10k CCD.
 1 79731 C1 FOURIER SPACE 10.5 FSC 0.143 CUT-OFF MPSA 79731 COMMON LINE MPSA COMMON LINE MPSA emd_8005.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 -256 -256 -256 512 512 512 1305.6 1305.6 1305.6 90.0 90.0 90.0 X Y Z -0.9238281 1.4693555 0.008668718 0.063288845 2.55 2.55 2.55 0.2 AUTHOR P22 mature virion emd_8005_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 66 66 52 -32 -32 98 66 66 52 168.3 168.3 132.59999 90.0 90.0 90.0 X Y Z -0.007732921 0.6353073 0.01285629 0.05372626 2.55 2.55 2.5499997 AUTHOR Hub emd_8005_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 126 118 88 -62 -58 118 126 118 88 321.3 300.9 224.4 90.0 90.0 90.0 X Y Z -0.025829282 0.838642 0.011847425 0.04960163 2.55 2.55 2.55 AUTHOR Tailspikes emd_8005_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 36 36 114 -18 -18 124 36 36 114 91.799995 91.799995 290.69998 90.0 90.0 90.0 X Y Z -0.1259538 0.9004552 0.0077716266 0.045906268 2.55 2.55 2.55 AUTHOR Needle emd_8005_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 230 226 234 -114 -113 -123 230 226 234 586.5 576.3 596.7 90.0 90.0 90.0 X Y Z -0.22751608 1.4604614 0.048327602 0.115378626 2.55 2.55 2.55 AUTHOR Encapsidated DNA emd_8005_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 28 28 66 -13 -13 10 28 28 66 71.4 71.4 168.3 90.0 90.0 90.0 X Y Z -0.17840046 0.95539945 0.0058982526 0.043270852 2.55 2.55 2.55 AUTHOR In-portal DNA emd_8005_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 38 52 76 -18 -21 61 38 52 76 96.9 132.59999 193.8 90.0 90.0 90.0 X Y Z -0.17322993 0.96674114 0.0062229303 0.0420429 2.55 2.5499997 2.55 AUTHOR Plug-like densities inside portal emd_8005_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 64 74 -32 -31 118 64 64 74 163.2 163.2 188.7 90.0 90.0 90.0 X Y Z -0.15337387 1.0880387 0.018483467 0.08233147 2.55 2.55 2.55 AUTHOR Other densities in the tail emd_8005_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 86 86 134 -42 -42 0 86 86 134 219.3 219.3 341.69998 90.0 90.0 90.0 X Y Z -0.0096169235 0.8452559 0.01590623 0.0614114 2.55 2.55 2.55 AUTHOR Portal emd_8005_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 -256 -256 -256 512 512 512 1305.6 1305.6 1305.6 90.0 90.0 90.0 X Y Z -14.451084 20.328785 -0.031311277 1.4085829 2.55 2.55 2.55 AUTHOR Independent Map A emd_8005_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 -256 -256 -256 512 512 512 1305.6 1305.6 1305.6 90.0 90.0 90.0 X Y Z -14.216578 20.740787999999998 -0.030729527 1.4081875 2.55 2.55 2.55 AUTHOR Independent Map B.