<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-7916" version="3.0.0.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_1/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-08-22</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-05-24</deposition>
            <header_release>2018-06-27</header_release>
            <map_release>2018-06-27</map_release>
            <update>2018-08-22</update>
        </key_dates>
        <title>VIC161 Fab in complex with Ebola virus GP</title>
        <authors_list>
            <author>Turner H</author>
            <author>Murin CD</author>
            <author>Pallesen J</author>
            <author>Ward AB</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Saphire EO</author>
                    <author order="2">Schendel SL</author>
                    <author order="3">Fusco ML</author>
                    <author order="4">Gangavarapu K</author>
                    <author order="5">Gunn BM</author>
                    <author order="6">Wec AZ</author>
                    <author order="7">Halfmann PJ</author>
                    <author order="8">Brannan JM</author>
                    <author order="9">Herbert AS</author>
                    <author order="10">Qiu X</author>
                    <author order="11">Wagh K</author>
                    <author order="12">He S</author>
                    <author order="13">Giorgi EE</author>
                    <author order="14">Theiler J</author>
                    <author order="15">Pommert KBJ</author>
                    <author order="16">Krause TB</author>
                    <author order="17">Turner HL</author>
                    <author order="18">Murin CD</author>
                    <author order="19">Pallesen J</author>
                    <author order="20">Davidson E</author>
                    <author order="21">Ahmed R</author>
                    <author order="22">Aman MJ</author>
                    <author order="23">Bukreyev A</author>
                    <author order="24">Burton DR</author>
                    <author order="25">Crowe Jr. JE</author>
                    <author order="26">Davis CW</author>
                    <author order="27">Georgiou G</author>
                    <author order="28">Krammer F</author>
                    <author order="29">Kyratsous CA</author>
                    <author order="30">Lai JR</author>
                    <author order="31">Nykiforuk C</author>
                    <author order="32">Pauly MH</author>
                    <author order="33">Rijal P</author>
                    <author order="34">Takada A</author>
                    <author order="35">Townsend AR</author>
                    <author order="36">Volchkov V</author>
                    <author order="37">Walker LM</author>
                    <author order="38">Wang CI</author>
                    <author order="39">Zeitlin L</author>
                    <author order="40">Doranz BJ</author>
                    <author order="41">Ward AB</author>
                    <author order="42">Korber B</author>
                    <author order="43">Kobinger GP</author>
                    <author order="44">Andersen KG</author>
                    <author order="45">Kawaoka Y</author>
                    <author order="46">Alter G</author>
                    <author order="47">Chandran K</author>
                    <author order="48">Dye JM</author>
                    <title>Systematic Analysis of Monoclonal Antibodies against Ebola Virus GP Defines Features that Contribute to Protection.</title>
                    <journal_abbreviation>Cell</journal_abbreviation>
                    <volume>174</volume>
                    <first_page>938</first_page>
                    <last_page>952.e13</last_page>
                    <year>2018</year>
                    <external_references type="PUBMED">30096313</external_references>
                    <external_references type="DOI">doi:10.1016/j.cell.2018.07.033</external_references>
                    <external_references type="ISSN">1097-4172</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-7916</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Complex of VIC161 Fab bound to Ebola virus GP</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Complex of VIC161 Fab bound to Ebola virus GP</name>
                <parent>0</parent>
                <details>Fab fragment generated by proteolytic cleavage of IgG antibody with papain.</details>
                <natural_source database="NCBI">
                    <organism ncbi="128952">Ebola virus - Mayinga, Zaire, 1976</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="7227">Drosophila melanogaster</recombinant_organism>
                    <recombinant_cell>S2</recombinant_cell>
                    <recombinant_plasmid>pMT-puro</recombinant_plasmid>
                </recombinant_expression>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.02</concentration>
                    <buffer>
                        <ph>7.4</ph>
                        <component>
                            <concentration units="mM">150.0</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chlordie</name>
                        </component>
                        <component>
                            <concentration units="mM">20.0</concentration>
                            <formula>Tris</formula>
                            <name>Tris(hydroxymethyl)aminomethane</name>
                        </component>
                        <details>Solution was made from 10X concentration.</details>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>uranyl formate</material>
                        <details>Stained using 2% UF on carbon coated grids.</details>
                    </staining>
                    <grid>
                        <model>Homemade</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>PLASMA CLEANING</type>
                            <atmosphere>OTHER</atmosphere>
                        </pretreatment>
                    </grid>
                    <details>This sample was monodisperse.</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI SPIRIT</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <c2_aperture_diameter units="&#181;m">100.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">0.001</nominal_defocus_max>
                    <nominal_magnification>52000.</nominal_magnification>
                    <specimen_holder_model>SIDE ENTRY, EUCENTRIC</specimen_holder_model>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>TVIPS TEMCAM-F416 (4k x 4k)</film_or_detector_model>
                            <digitization_details>
                                <dimensions>
                                    <width units="pixel">4096</width>
                                    <height units="pixel">4096</height>
                                </dimensions>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>67</number_real_images>
                            <average_exposure_time units="s">0.5</average_exposure_time>
                            <average_electron_dose_per_image units="e/&#8491;^2">30.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <startup_model type_of_model="OTHER">
                    <details>Common lines model.</details>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C3</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">24.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN2</name>
                            <version>2.1</version>
                        </software>
                    </software_list>
                    <number_images_used>17780</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>COMMON LINE</type>
                    <software_list>
                        <software>
                            <name>EMAN2</name>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                    <software_list>
                        <software>
                            <name>EMAN2</name>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_7916.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>80</col>
            <row>80</row>
            <sec>80</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>80</x>
            <y>80</y>
            <z>80</z>
        </spacing>
        <cell>
            <a units="&#8491;">328.0</a>
            <b units="&#8491;">328.0</b>
            <c units="&#8491;">328.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-73.589830000000006</minimum>
            <maximum>83.870990000000006</maximum>
            <average>0.53539866</average>
            <std>5.7958617</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">4.1</x>
            <y units="&#8491;">4.1</y>
            <z units="&#8491;">4.1</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>27.100000000000001</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-7916::::</label>
        <annotation_details>VIC161 antibody Fab in complex with Ebola virus GP</annotation_details>
    </map>
</emd>