2026-09-23 REL RCSB INITIAL_RELEASE REPOSITORY RCSB RCSB 2026-09-09 2026-09-23 2026-09-23 2026-09-23 Other private United States European Research Council (ERC) 101201241 European Union European Research Council (ERC) 833713 European Union LPT translocon complex from Flavobacter johnsoniae - consensus volume Lea SM Berks BC LPS transport SLP transport outer membrane protein complex, MEMBRANE PROTEIN Liu X Orenday Tapia L Bryant OJ Lea SM Berks BC An expanded LPS translocon mediates surface lipoprotein export in the Bacteroidota To Be Published 0353 EMDB EMD-79006 associated EM volume LPT complex LPT complex 0 1 2 3 4 5 6 7 8 9 Flavobacterium johnsoniae UW101 LptP Flavobacterium johnsoniae UW101 0.060591940999999996 1 LEVO MFKSKFKYISFLLVLLMMSCAKRGSITGGLKDTLAPVLVSSAPKNFTTDFKGNEINLVFDEYIKLKNLNKQLIISPPMKYEPLITPTGVSKFINIKIKDTLLPNTTYSFNFGESIADNNEGNALNQFKYIFSTGPYIDSLTLGGKIKDAYAKNVDNFVSVMLYEANYKYKDSVIYKEFPRYITNTLDSMRTFKFENLKEGKYLLVALKDKSNNNKYNPKDDKIGFIKHFITVPNDTLFELSLFKETLPLKTLKPIQASGNRLLLPYEGKQNFKLNKPTIVLKNNGETLETIVTQFPKKDSLQIWYKPLKADSLSLEVSKDTYNKKFTFKIKDQKKDTLNIKAVQNGVINFRDRFTLDTETPLVKFDKSKIKLINKDSTAVDFTTEYNEFEQKLYVDFKKEPLEKYSFTFFPGALTDFYDKTNDTLSYKLSTKEYADYGNLILNLKNVKRFPIIVEITNKKGDEVLASEYSEGKTQIEFNLMLPSQFTIRVIYDDNKNKMYDTGNFLEKRYAEEVFYFQREIDVRTNWDVNETIDLSVPYNPDVEKKEDLKKRKDDEKKRKAF LptA Flavobacterium johnsoniae UW101 0.042206851999999996 1 LEVO MLVLSVQSTFAQAAKSAKTAPKQIHVEHADNFERNEPLVPGAVLLSGNVKVDHDGIVLTCNKAYIFEGENYLKAFGNVQLVQGDTLFLNSKYAEYSGNLKQAFATGDAVMTSPDATLQTDTIHFDRNIQQAYYNTKGTIVNKENTLVSKSGRYFAAEKKFQFLTEVTITNPKYVIKSNHLDYYSNSGHTYLLGPSTITSKANYIYTERGFYDTKKNLAHFLRKSYIKYDDRLIEGDSLYYNRNTEFASATRNVKITDSINKGIVKGHYAEIFKLKDSMFVTKRAVAINLVENDSVYIHGKKLMVTGKEGERILRAFNNVRFYKTDMSGKCDSIHSNSKTALTKLIGNPIIWNGESQITGDIMHLIGDNNTKKLDSLKVLNNTFIISKDTLGTGYNQVKGINLFGKFKEGKLHDVDVIKNTEVVYFMRNDDNELIGINKNVSSKINLILENNLIETITFFNKVDGDIYPETDLPENARKLRGFVWRGDERIKSKDDIFTEEDNELNEKLIKEGKEQEEKNKNVPLKVRKETLNYDKKKPAPKTEAKDKKK LptN Flavobacterium johnsoniae UW101 0.071564312 1 LEVO MRIFIFLYLLIIPTLLFSQEKTTSKGSLDMNTKYSSITDTVKKKKAKIAKIEQYQIISLEHDTINADTSLTIKSAYKQNHLRKDLFGLLEFPNIGQPLNILQYSLTSYSPYPEIGFTAKHYNYIQADEIRYYSVPTPLTELFFNTTINKGQNVDSFITLNTSKNLNFSIAYRGLRSEGDYINQLVSAGNFRFTTSYATTNRRYALNVHYTYQDNLNEENGGITTAEDFESGSADFKNRQRLQVYLTDAKSFLKGRRLFFDHAFRINPKDGNNNLYINHQFNYENKFFEYNQATVLSAVDGFTEPVKRFGESYVTSGINDQTHFERLYNRVGAAYENSLLGKFNFFVDDYRSNYKYNRILIDASGNVIPDNLFLQINNFGGQYEYQKNKWNGRFLYTRSITNQSLSDLDAKLRYDLNDKIQFDFRYRNINKLPNNNYNLYQSSYVEYNWSNNFKNEKINSLGASISTPWVNAEAQYTVLKDHLYFVDMATPAQAALRTQIVKPAQYGNVINYLEIKASREFKFGKFALDNTLLYQKVDQSELILNVPDFVTRNTFYYTNYFFKKALYAQGGVVFNYFTKYYGNSYNPVIGEFFVQNTKEIGNYATFDVFINARIRQTRFYLKAEHLNALFSSSNYYSAPDNPYRDFVIRFGLVWNFFQ LptS Flavobacterium johnsoniae UW101 0.035002754 2 LEVO MKKYASLIFLAFLLNGCDDGDLTVDEINFDSVTPVSCTTFTENSLSTDPTIIYKLKTQEAFVLQLPQTNGLVNNNGTVTYDIDNSIYRVLYRAYNGAVAKDNICGTIPPSSPNVTEEWVGASGKIKIVSSQVPTTTDANDSFRIEAYNHVITFENITFQKPSGPQVQEIFEFGTFKTTVTPADLTFQNTDTGEAFNCPDNKKIYNYNASFTLTVENLDPALLTNEATAPNQPRSQAITATTNKVVYRNFVNGSGSITSTYDFCAAQIPSLPLLNQTWIGADTSETKKATIEVTTEKIGDKTFIHTVVLKNVKLTKDSSYFQLGNTFTLGKITVNL LptQ Flavobacterium johnsoniae UW101 0.022214863 1 LEVO MKHTLKYTFSLCFLLSMFLGYSQVVIKDTVTVRDLDDQKPKTEVAAKPSVKEIKKDSISIKTDRYGLRVGVDLYKLTRGFYDKNYKGIEFTADWRLTKKYYIAAELGFEDKTTDDDRLNSTATGTYIKGGFDYNLYDNWLDMENLITIGLRGGFSSFSQDLNSYKIYNPNPYWGEQPAMSANQKYNGLSAAWLEVALGVKAKVFNNIFVGFGVQLKLLAMNNKPSGFDNLYIPGFNRTYDGSFGVGFNYTVSYFIPIYKKKTIVPEIINQAPKK LptR Flavobacterium johnsoniae UW101 0.018209254 1 LEVO MKKIISLLLLFTFGLSSCEKDDICDANTPTTPRLVITFYDNAAPTSLKTVTNLKVVGEGKEDTDAIIFNETGTSVTKYLTNANTISIPLKTDAKTTTYKFIYNATSATPNIDVLTFNYETQSVYVSRACGFKTTFTLNPRDNTANSGLIRTDPAGDGLWMLNINVVNSNIELENETHVKVYF LptT Flavobacterium johnsoniae UW101 0.014259058 1 LEVO MNKIVPISLLFFLLGTVSLFAQVKEETVLVAKDSIALEEIDPLTPAKAAFYSAILPGLGQAYNKKYWKIPLVYGAIGTSLYFYIDNNNKYRDYRNAYKRRLEGYNDDKYQYLDESRLVAGQKFYQRNRDLSALFVVGFYVLNIIDANVDAALIQFNVNERLSMRPEIYPNDVTFKPNVGLTFNYRF LptD Flavobacterium johnsoniae UW101 0.09141895299999998 1 LEVO LHTNLFNIVLISFFLTIGCGKSYSQEIKPKKKSLPASAWSHPQFEKGGGSGGGSGGSAWSHPQFEKTSVKQTNKPATAPAAATPAVSTATVDTIKIDSIKPKKQFLDAPTKYKAKDYAKYDKKNKLLTLYNEAELYYKDVELKSGIIILNLEKDEVYAGRIKDSAGVLVQYPNFKQGTNEVQPDSIRFNFKTKKALIYNSRTKQGELNIKASVTKKENDSVYFLKGARITTAQDIDNPEYYFQTSRIKFVPGKKIVAGLTQMVIADVPTPLALPYGFFPLSKEKSVSGIIIPSYNDSNTRGFSLQNGGYYFALSDNYDLTVLGDYYTNGSYAMRFESAYAKRYKYRGNINVRFENLINSERGYPDYSKQNIYNIQWSHSKDTKSNPNSTFSASVNMGSSKYFKRSINQANIGSNLNNTLSSSISYNKTFNTIPGSRISLSATHQQNTQTEEILMTLPNFQGSIDRIYPFVGENGVKKGFFKNINLQYNVTGKNNFKTTDSLFFKPQMFRDAQIGMQHSIPISTNFKIFKYFSAGASTNYQETWVTKTIDKNYDASKGQVASTTVNGFDAFRTYNFSTNLGTTIYGTFNFGTDKKIQSIRHVMRPSITYSYTPSFERYYDHYTVDAAGRISTDEYTRFENGIYGAPGKENSNIVGFSLSNTFEAKVRDSDSTKTEPKKIMLLNNLNFSTSYNFNANGKETLAWQPIIVSGGTQFFENKMNVNFGAVLNPYAIDNAGNVINMYNIENGGSLFRMTSANITMNYSFSNKGTGKEKNTQSQRNGGRNDDLFGTNTDLNDSRNSQFANDPDREEDVITEFFSSKLPWDMTMAYSLTYSNANRENKITGNSIMISANMDITPKWKGGVSTGFDFVQKGVTFTQFRFERDLLSWRMAFNWQPMGTSSNWNFFIGIKSGMLSDIKWNKRSTINR LptE Flavobacterium johnsoniae UW101 0.016972932 1 LEVO MKHLKYLLLLLVATTFSGCGVYNFTGASPIDAKTFQVSFFHNNADLVEPGIDRDFTLALQDLIMNQTNLNLVSNGGELAYEGEIVDYRITPMTATAVTSTGDVGAAQNRLTIRINVRFTNKKKETDDFEKPFEFYYDFPGASLPTGSVLNEAIKTIFERITQDIFNESLAKW singleParticle particle 7.4 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 2.0
Data were collected at both 200kV and 300kV on two different Titan Krios and an Arctica
GATAN K3 BIOQUANTUM (6k x 4k) 50.0
Data were collected on three microscopes Titan Krios / Gatan K3 BioQuantum Titan Krios / Falcon 4i Arctica / Gatan K3 BioQuantum
 1
Data were combined from two different Gatan K3 Bioquantum detectors and a Falcon 4i
SIMPLE PHASE FLIPPING AND AMPLITUDE CORRECTION 2.9 FSC 0.143 CUT-OFF cryoSPARC 218874 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_79006.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 499.7 499.7 499.7 90.0 90.0 90.0 X Y Z -0.7698096 1.9706506 0.0010094825 0.031320717 1.315 1.315 1.315 0.31 AUTHOR refinement volume emd_79006_msk_1.map emd_79006_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 499.7 499.7 499.7 90.0 90.0 90.0 X Y Z -0.0027827001 1.6256148 0.00032823015 0.012341825 1.315 1.315 1.315 AUTHOR deepEMhanced volume emd_79006_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 499.7 499.7 499.7 90.0 90.0 90.0 X Y Z -0.8934491 2.2301953 0.0011696636 0.08276152 1.315 1.315 1.315 AUTHOR half map B emd_79006_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 380 380 380 0 0 0 380 380 380 499.7 499.7 499.7 90.0 90.0 90.0 X Y Z -0.9425287 2.2223024 0.0011717597 0.08273652 1.315 1.315 1.315 AUTHOR half map A