2024-10-16 REL RCSB RCSB RCSB 2018-05-14 2018-06-06 2019-11-06 2024-10-16 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) UM1 AI100663 United States Bill & Melinda Gates Foundation OPP1115782 United States Bill & Melinda Gates Foundation OPP1084519 United States BG505 MD39 SOSIP trimer in complex with mature BG18 fragment antigen binding Ozorowski G Steichen JM HIV-1, HIV Envelope, SOSIP, germline targeting, antibody, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex Steichen JM Lin YC Havenar-Daughton C Pecetta S Ozorowski G Willis JR Toy L Sok D Liguori A Kratochvil S Torres JL Kalyuzhniy O Melzi E Kulp DW Raemisch S Hu X Bernard SM Georgeson E Phelps N Adachi Y Kubitz M Landais E Umotoy J Robinson A Briney B Wilson IA Burton DR Ward AB Crotty S Batista FD Schief WR A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses. Science US 366 2019 31672916 doi:10.1126/science.aax4380 1095-9203 0038 SCIEAS EMD-7876 other EM volume 6dfg FULLOVERLAP BG505 MD39 SOSIP trimer in complex with mature BG18 fragment antigen binding BG505 MD39 SOSIP trimer in complex with mature BG18 fragment antigen binding 0 1 2 3 4 0.57 SOSIP trimer 1 1 2 Human immunodeficiency virus 1 BG18 fragment 1 3 4 Homo sapiens Envelope glycoprotein gp160 Human immunodeficiency virus 1 0.053302312 3 Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIIS LWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKE YRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEV IIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYTGDIIGDIRQAHCNVSKATWNETLGKVVKQLRK HFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQ AMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGR Q2N0S6 Envelope glycoprotein gp160 Human immunodeficiency virus 1 0.018250541 3 Homo sapiens LEVO AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHH HH Q2N0S8 mature BG18 fragment antigen binding heavy chain Homo sapiens 0.025043186000000002 3 Homo sapiens LEVO QVQLRESGPGLVKPSETLSLSCTVSNDSRPSDHSWTWVRQSPGKALEWIGDIHYNGATTYNPSLRSRVRIELDQSIPRFS LKMTSMTAADTGMYYCARNAIRIYGVVALGEWFHYGMDVWGQGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC mature BG18 fragment antigen binding light chain Homo sapiens 0.022937351999999998 3 Homo sapiens LEVO SSELTQPPSVSVSPGQTARITCSGAPLTSRFTYWYRQKPGQAPVLIISRSSQRSSGWSGRFSASWSGTTVTLTIRGVQAD DEADYYCQSSDTSDSYKMFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG VETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 18 NAG singleParticle particle 4.75 7.4 50.0 Tris 150.0 NaCl Sodium chloride 0.06 n-Dodecyl-B-D-Maltopyranoside Quantifoil R1.2/1.3 COPPER 400 CARBON HOLEY PLASMA CLEANING OTHER
Gatan Model 950 Advanced Plasma System
 ETHANE 100 283 FEI VITROBOT MARK IV
3.5 second blot time.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.0 2.5 29000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 3710 3838 691 12.0 62.0 1 4ZMJ
PDB converted to MRC map and low pass filtered to 60 A
 C3 4.42 FSC 0.143 CUT-OFF RELION 2.1 45306 PROJECTION MATCHING RELION 2.1 PROJECTION MATCHING RELION 2.1 emd_7875.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 296.63998 296.63998 296.63998 90.0 90.0 90.0 X Y Z -0.046179015 0.11150046 0.0003827779 0.0061902837 1.03 1.03 1.03 0.04 AUTHOR Sharpened map RIGID BODY FIT REAL emd_7875_msk_1.map emd_7875_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 296.63998 296.63998 296.63998 90.0 90.0 90.0 X Y Z -0.007973474 0.034598064 0.00019529709 0.0025396622 1.03 1.03 1.03 AUTHOR Half map 1 emd_7875_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 296.63998 296.63998 296.63998 90.0 90.0 90.0 X Y Z -0.00839925 0.03315041 0.00018748078 0.0025370372 1.03 1.03 1.03 AUTHOR Half map 2