<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-7866" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-06-27</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-05-09</deposition>
            <header_release>2018-05-30</header_release>
            <map_release>2018-06-27</map_release>
            <update>2018-06-27</update>
        </key_dates>
        <title>HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664.N130A in complex with PCT64_35S Fab</title>
        <authors_list>
            <author>Berndsens ZB</author>
            <author>Rantalainen KR</author>
            <author>Ward AB</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Rantalainen K</author>
                    <author order="2">Berndsen ZT</author>
                    <author order="3">Murrell S</author>
                    <author order="4">Cao L</author>
                    <author order="5">Omorodion O</author>
                    <author order="6">Torres JL</author>
                    <author order="7">Wu M</author>
                    <author order="8">Umotoy J</author>
                    <author order="9">Copps J</author>
                    <author order="10">Poignard P</author>
                    <author order="11">Landais E</author>
                    <author order="12">Paulson JC</author>
                    <author order="13">Wilson IA</author>
                    <author order="14">Ward AB</author>
                    <title>Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design.</title>
                    <journal_abbreviation>Cell Rep</journal_abbreviation>
                    <country>US</country>
                    <volume>23</volume>
                    <first_page>3249</first_page>
                    <last_page>3261</last_page>
                    <year>2018</year>
                    <external_references type="PUBMED">29898396</external_references>
                    <external_references type="DOI">doi:10.1016/j.celrep.2018.05.046</external_references>
                    <external_references type="ISSN">2211-1247</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-7866</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
                <details>Ectodomain of full length, wild type HIV-1 glycoprotein clone PC64M18C043 in complex with PGT151 Fab</details>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>HIV-1 Envelope glycoprotein clone PC64M4C054.SOSIP.664.N130A in complex with PCT64-35S Fab</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>HIV-1 Envelope glycoprotein clone PC64M4C054.SOSIP.664.N130A in complex with PCT64-35S Fab</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="11676">Human immunodeficiency virus 1</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664.N130A</name>
                <natural_source database="NCBI">
                    <organism ncbi="11676">Human immunodeficiency virus 1</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARANNLWVTVYYGVPVWRDAETTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEIHLANVTEKFNMWKNSMVEQMHTDIISLWDESLKPCVKLTPLCITLACTNITRKNVTGGNLTEDGKEELKNCSFNATTELRNKRQKVHSLFYRLDLVELNEGNSSNSNTSMYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCREEEFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEGTVKIRCENISNNAKTILVQLTTPVRINCTRPNNNTRTSIRIGPGQSFYATGDIIGDIRKAYCNVSGSEWKEALGKVVVQLRSHFNKTITFASSSGGDLEITTHSFNCGGEFFYCNTSSLFNSTWDGNSTTNSTQEPNGTITLPCRIKQIINMWQRTGQAMYAPPIPGKIRCDSNITGLILTRDGENNNTESETFRPEGGDMRNNWRSELYKYKVVKIDPLGVAPTGCKRRVVERRRRRRAVGIGAVLFGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQSNLLRAPEAQQHLLRLTVWGIKQLQARVLAVERYLSDQQLLGIWGCSGKLICCTTVPWNSSWSNKSQDEIWNNMTWLQWDKEISNYTDTIYYLIEKSQNQQEVNEKDLLALD</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Immunoglobulin G PCT64-35S Fab, Heavy chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>EVQLVESGGGLVKPGGSLRLACVGSEFTFSEAWMTWVRQAPGKGLEWVGHMRPTTEGGAKDYAAAVRGRFTIARDDSKSTLYLQMNSLKIEDTGVYYCMTGVERGDFWSDDYSQHYNTYLIDVWGKGTTVTVSS</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>Immunoglobulin G PCT64-35S Fab, Light chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>EIVLTQSPGTLSLSPGDRATLSCRATQSVGGDYFAWYQQRPGQSPRLLIYGTSRRAAGIPDRFSGSGSGTDFTLTIDRLEPEDFAVYYCRQYETSFTFGPGTKVDIK</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <grid>
                        <model>C-flat-2/2</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">277.15</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <details />
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <c2_aperture_diameter units="&#181;m">100.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <digitization_details />
                            <number_real_images>867</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">62.2</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.0</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">8.2</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.0</version>
                        </software>
                    </software_list>
                    <number_images_used>45661</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>NOT APPLICABLE</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.0</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>2.0</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="131073">
        <file>emd_7866.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>320</col>
            <row>320</row>
            <sec>320</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>320</x>
            <y>320</y>
            <z>320</z>
        </spacing>
        <cell>
            <a units="&#8491;">329.59998</a>
            <b units="&#8491;">329.59998</b>
            <c units="&#8491;">329.59998</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.0309382</minimum>
            <maximum>0.08298791</maximum>
            <average>0.00013766426</average>
            <std>0.004241346</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.03</x>
            <y units="&#8491;">1.03</y>
            <z units="&#8491;">1.03</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.02</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-7866::::</label>
        <annotation_details>HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664.N130A in complex with PCT64_35S Fab, full map</annotation_details>
    </map>
    <interpretation>
        <segmentation_list>
            <segmentation>
                <file>emd_7866_msk_1.map</file>
            </segmentation>
        </segmentation_list>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="131073">
                <file>emd_7866_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>320</col>
                    <row>320</row>
                    <sec>320</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>320</x>
                    <y>320</y>
                    <z>320</z>
                </spacing>
                <cell>
                    <a units="&#8491;">329.59998</a>
                    <b units="&#8491;">329.59998</b>
                    <c units="&#8491;">329.59998</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.017167859</minimum>
                    <maximum>0.030348286</maximum>
                    <average>0.00006825552</average>
                    <std>0.0022630156</std>
                </statistics>
                <pixel_spacing>
                    <x units="&#8491;">1.03</x>
                    <y units="&#8491;">1.03</y>
                    <z units="&#8491;">1.03</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <level>0.02</level>
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-7866::::</label>
                <annotation_details>HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664.N130A in complex with PCT64_35S Fab, half map 1</annotation_details>
            </half_map>
            <half_map format="CCP4" size_kbytes="131073">
                <file>emd_7866_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>320</col>
                    <row>320</row>
                    <sec>320</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>320</x>
                    <y>320</y>
                    <z>320</z>
                </spacing>
                <cell>
                    <a units="&#8491;">329.59998</a>
                    <b units="&#8491;">329.59998</b>
                    <c units="&#8491;">329.59998</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.015640602</minimum>
                    <maximum>0.030190077</maximum>
                    <average>0.00006940875</average>
                    <std>0.002252909</std>
                </statistics>
                <pixel_spacing>
                    <x units="&#8491;">1.03</x>
                    <y units="&#8491;">1.03</y>
                    <z units="&#8491;">1.03</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <level>0.02</level>
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-7866::::</label>
                <annotation_details>HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664.N130A in complex with PCT64_35S Fab, half map 2</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>