2018-06-27 REL RCSB RCSB RCSB 2018-04-22 2018-05-09 2018-06-20 2018-06-27 Human nuclear exosome-MTR4 RNA complex - focused reconstruction on the DIS-PIN domain Weick E-M Lima CD Weick EM Puno MR Januszyk K Zinder JC DiMattia MA Lima CD Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex. Cell 173 1663 1677.e21 2018 29906447 doi:10.1016/j.cell.2018.05.041 1097-4172 EMD-7809 other EM volume
Composite map
 EMD-7812 associated EM volume
Human nuclear exosome-MTR4 RNA complex - composite map after focused reconstruction
 EMD-7810 other EM volume EMD-7808 other EM volume EMD-7813 other EM volume EMD-7814 other EM volume EMD-7815 other EM volume EMD-7818 other EM volume EMD-7819 other EM volume Human nuclear exosome-MTR4 helicase captured after unwinding a DNA/RNA substrate Human nuclear exosome-MTR4 helicase captured after unwinding a DNA/RNA substrate 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
Human C1D/Rrp47 also in the sample, but was not observed in density
Homo sapiens Escherichia coli 0.69 singleParticle particle 1.0 8. 20.0 Tris-HCl 100.0 NaCl sodium chloride 0.5 MgCl2 magnesium chloride 2.0 AMPPNP 1.0 BME 0.05 CHAPSO Quantifoil R2/2 GOLD GLOW DISCHARGE AIR 0.037 ETHANE 298 FEI VITROBOT MARK IV
30 sec wait time, 2.5 sec blot time.
Sample was monodisperse upon elution from gel filtration prior to vitrification.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1439 85.23 1 278185 Gctf 1.06 determine RELION 2.1.b1 apply
Ab initio model determination
 1 C1 3.4 FSC 0.143 CUT-OFF RELION 2.1b1
Focused refinement on DIS3-PIN and part of PH-ring
122284 RANDOM ASSIGNMENT cryoSPARC 0.6.1 from 0.6.1 to 0.6.5 PROJECTION MATCHING RELION 2.1b1 4 271036. RELION 2.1b1 emd_7812.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 410.88 410.88 410.88 90.0 90.0 90.0 Z X Y -0.120548755 0.19239767 0.00004187069 0.0019666187 1.07 1.07 1.07 0.03 AUTHOR Human nuclear exosome-MTR4 RNA complex - composite map after focused reconstruction BACKBONE TRACE
Models were rebuilt manually using Coot, with real space refinement with local scaling followed by Phenix real space refinement with suboptimal global scaling.
Correlation coefficient REAL 64.299999999999997