Arabidopsis thaliana V-type ATPase, State 2, Backbone model

2026-09-09 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY RCSB RCSB 2026-06-26 2026-09-09 2026-09-09 2026-09-09 Canadian Institutes of Health Research (CIHR) PJT195707 Canada German Research Foundation (DFG) CRC1101 Germany Arabidopsis thaliana V-type ATPase, State 2, Backbone model Khamina M Rubinstein JL Membrane protein, protein complex, pH regulation, HYDROLASE Khamina M Wunsch N Lupanga U Fink F Wang H Schulze WX Schumacher K Rubinstein JL Cryo-EM structure of the Arabidopsis thaliana V-type ATPase To Be Published 0353 EMD-77758 consensus EM volume

Arabidopsis V-ATPase state 2, consensus map

EMD-77759 focused EM volume

Arabidopsis V-ATPase state 2, V1 subcomplex focused map

EMD-77760 focused EM volume

Arabidopsis V-ATPase state 2, c-ring focused map

EMD-77756 focused EM volume

Arabidopsis V-ATPase, subunit a focused map

EMD-77757 focused EM volume

Arabidopsis V-ATPase, subunits C, H and peripheral stalks focused map

36qv FULLOVERLAP EMDB EMD-77758 consensus EM volume

Arabidopsis V-ATPase state 2, consensus map

EMDB EMD-77759 focused EM volume

Arabidopsis V-ATPase state 2, V1 subcomplex focused map

EMDB EMD-77760 focused EM volume

Arabidopsis V-ATPase state 2, c-ring focused map

EMDB EMD-77756 focused EM volume

Arabidopsis V-ATPase, subunit a focused map

EMDB EMD-77757 focused EM volume

Arabidopsis V-ATPase, subunits C, H and peripheral stalks focused map

EMDB EMD-77787 associated EM volume

Arabidopsis thaliana V-type ATPase, State 2, Backbone model

Arabidopsis V-ATPase State 1 Arabidopsis V-ATPase State 1 0 2 3 4 5 6 7 8 9 10 11 Arabidopsis thaliana V-type proton ATPase subunit B1 Arabidopsis thaliana 0.054164352 3 LEVO MGTNDLDIEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNK FTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTVDLLEDHGEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLA NDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGR KGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYA NYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFY SRDSTS P11574 V-type proton ATPase subunit E1 Arabidopsis thaliana 0.026101053 3 LEVO MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEKQADVRKKIDYSMQLNASRIK VLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVH APEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA Q39258 V-type proton ATPase subunit G1 Arabidopsis thaliana 0.012416915 3 LEVO MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETD TKIEQLKNEASRISKDVVEMLLKHVTTVKN O82628 V-type proton ATPase subunit D Arabidopsis thaliana 0.029104756 1 LEVO MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMGDMMKTSSFALTEVKYVAGDN VKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKNDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTL DEAIKTTNRRVNALENVVKPKLENTISYIKGELDELEREDFFRLKKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGI SINAARNFLVGGAEKDSDIIF Q9XGM1 V-type proton ATPase subunit F Arabidopsis thaliana 0.014276353999999998 1 LEVO MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFKEFSARDDIAIILLSQYIANM IRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVSQR Q9ZQX4 V-type proton ATPase subunit H Arabidopsis thaliana 0.050346262 1 LEVO MDQAELSIEQVLKRDIPWETYMNTKLVSAKGLQLLRRYDKKPESARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLAL IYEMLSANPTRARLFHDESLANEDTYEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNGIDDVLKGLVEWLCA QLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATS RTMQRLTEVVKHSTKEKVVRVVILTFRNLLPKGTFGAQMVDLGLPHIIHSLKTQAWSDEDLLDALNQLEEGLKDKIKKLS SFDKYKQEVLLGHLDWNPMHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVAD LKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA Q9LX65 V-type proton ATPase subunit AP1 fragment Arabidopsis thaliana 0.035015453 1 LEVO MKKIQIGAVALLVFLSVASLFEIGLASPNTVPAFLWSPHLQSANGELDEAVNYQVMSAKDLVGSVFTQGGWSNFLCSEKK LEQPVDVALVFIGRELLSSDVSSKRNSDPALVNTLNNLFTASNFSLAFPYIAAPEEERMENLLLSGLKEACPNNVGVSNI VFSDSCFVEDGTIQKLSDLQSFKDHLLARRETRKEGETDLVVLCSEGSESNSQAGQSHSERESFLELVSSVEQSGSKYTA LYVSDPYWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLLEGILVGIVFLLILISGLCCMAGIDTPTRFETPQD S Q93WB8 V-type proton ATPase subunit c''1 Arabidopsis thaliana 0.018383625 1 LEVO MSGVVALGHASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIYG VIVAIILQTKLESVPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSTLFVKILVIEIFGSAL GLFGVIVGIIMSAQATWPTK Q9SZY7 V-type proton ATPase subunit d1 Arabidopsis thaliana 0.040835688 1 LEVO MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGSYLQNEPSPLHTTTIVEKCTLKLVD DYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPL APYFSECLTSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKL YSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRL REQEIRNLMWISECVAQNQKSRIHDSVVYMF Q9LJI5 V-type proton ATPase subunit e2 Arabidopsis thaliana 0.007688377 1 LEVO MAFVVTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVPILSEVE Q9SZ13 V-type proton ATPase subunit c1 Arabidopsis thaliana 0.016581587999999998 9 LEVO MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN PKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ SRAE P0DH92 V-type proton ATPase subunit AP2 fragment Arabidopsis thaliana 0.039164425999999995 1 LEVO MKAFYVFVVALLLTLNYRGEASGSVFFIDGSNNQYLRPRSSSEALPMSPVEISAAVSALLGFAPSATLTADGSSKLNKIL KPNPFERPRAAFVLEIAGADDMLLETSPSHSFLGNAIRSSIKSDSYKADTELPDNEVVVVSVNEPSSDVTDKDINDFASW LGGSYVAGAEPSSGLLSIPLAGGANVEFNLEKEAERKFALNLLGLYQNIRQAVSVYDDLSHGIDRTAELTVGRFGGIDAL AQEYGQGMAKQGMDVLLSTLSKLFNLLETSHKGQIVGVIVLDERVNQESENLLNFGSSRSSARSMVEVEGIPSAAIIAEV ILVRLTLAWLTGIILLIATILGVYFLMNMPLTKDTLLYSNVKLD Q9ZSJ7 V-type proton ATPase catalytic subunit A Arabidopsis thaliana 0.06888423399999999 3 LEVO MPAFYGGKLTTFEDDEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLTVND PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARISGDVYIPRGVSVPALDKDCLWEFQPNKFVEGDTITGGDLYATVFE NTLMNHLVALPPDAMGKITYIAPAGQYSLKDTVIELEFQGIKKSYTMLQSWPVRTPRPVASKLAADTPLLTGQRVLDALF PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN MPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGG PERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRT KAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVER AAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEDTLVEKFKKLYDDLNAGFRALEDETR O23654 7.1.2.2 V-type proton ATPase subunit C Arabidopsis thaliana 0.042667198999999996 1 LEVO MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKSNSFVEGVSQKIRRQIEEL ERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKEVVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGS LAVRDLSNLVKPEDIVESEHLVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLFEDNEYALYTVTLFTRVADNFRIAA REKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRTFAESIMRYGLPPAFLACVL SPAVKSEKKVRSILERLCDSTNSLYWKSEEDAGAMAGLAGDSETHPYVSFTINLA Q9SDS7 V-type proton ATPase subunit a3 Arabidopsis thaliana 0.092928086 1 LEVO MAESGGGGGCCPPMDLMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEMARKIRFF RDQMSKAGVPAKEMQGKENDIDLDDVEVKLGELEAELVEINANNDKLQRSYNELMEYKLVLQKAGEFFSSAHRSAADQQR ETESQQAGEDLLESPLLQEEKSIDSTKQVKLGFLTGLVPREKSMVFERILFRATRGNIFIRQTVIEEPVIDPNSGEKAEK NVFVVFYSGERAKSKILKICEAFGANRYPFSEDLGRQAQMITEVSGRLSELKTTIDAGLGQRNILLQTIGDKFELWNLKV RKEKAIYHTLNMLSLDVTKKCLVAEGWSPVFASREIQDALQRAAVDSNSQVGSIFQVLRTKESPPTYFRTNKFTSAIQEI VDAYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICILLATMYLILKEKKLASQKLGDIMEMAFGGRYVILMMSLFSI YTGLIYNEFFSIPFPLFAPSAYDCRDVSCSEATTIGLIKVRDTYPFGLDPVWHGSRSELPFLNSLKMKMSILLGVSQMNL GIIMSYFNARFFKSSVNIWFQFIPQMIFLNSLFGYLSVLIIIKWCTGSQADLYHVMIYMFLSPMDELGENQLFPHQKTLQ LVLLFLALVSVPCMLLPKPFILKKQHEARHQGQAYAPLDETDESLHVETNGGGSHGHEEFEFSEIFVHQLIHTIEFVLGA VSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNPLILIVGVLVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKF YEGDGYKFAPFTFIFTANEDE Q8W4S4 ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP MAGNESIUM ION 2.4305e-05 1 MG singleParticle particle 7.0 Homemade COPPER/RHODIUM 400 GOLD HOLEY 3.5 GLOW DISCHARGE 120 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.8 2.0 130000.0 TFS Selectris X 10 TFS FALCON 4i (4k x 4k) 7681 40.0 1 190490 cryoSPARC PHASE FLIPPING AND AMPLITUDE CORRECTION 3.0 FSC 0.143 CUT-OFF cryoSPARC 48315 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC emd_77787.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 476.16 476.16 476.16 90.0 90.0 90.0 X Y Z -0.12711228 1.7717257 0.015534757 0.04534056 0.93 0.93 0.93 0.194 AUTHOR ::::EMDATABANK.org::::EMD-77787::::