2024-03-13 REL RCSB RCSB RCSB 2018-04-02 2018-05-23 2018-10-31 2024-03-13 Cryo-EM structure of Seneca Valley Virus-Anthrax Toxin Receptor 1 complex Jayawardena N Burga L Virus-receptor complex, Picornavirus, Senecavirus, Anthrax Toxin Receptor, VIRUS Jayawardena N Burga LN Easingwood RA Takizawa Y Wolf M Bostina M Structural basis for anthrax toxin receptor 1 recognition by Seneca Valley Virus. Proc. Natl. Acad. Sci. U.S.A. US 115 E10934 E10940 2018 30381454 doi:10.1073/pnas.1810664115 1091-6490 0040 PNASA6 6cx1 FULLOVERLAP Seneca Valley Virus-Anthrax Toxin Receptor 1 complex Senecavirus A 0 1 2 3 4 5 Senecavirus A 6.5 Capsid 300.0 3 VIRION STRAIN false false Anthrax toxin receptor 1 Homo sapiens 0.021026668000000002 1 Homo sapiens LEVO CYGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDT YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIADSKDHV FPVNDGFQALQGIIHSILKKSC Q9H6X2 Capsid protein VP1 Senecavirus A 0.028459968999999998 1 LEVO STDNAETGVIEAGNTDTDFSGELAAPGSNHTNVKFLFDRSRLLNVIKVLEKDAVFPRPFPTQEGAQQDDGYFCLLTPRPT VASRPATRFGLYANPSGSGVLANTSLDFNFYSLACFTYFRSDLEVTVVSLEPDLEFAVGWFPSGSEYQASSFVYDQLHVP FHFTGRTPRAFASKGGKVSFVLPWNSVSSVLPVRWGGASKLSSATRGLPAHADWGTIYAFVPRPNEKKSTAVKHVAVYIR YKNARAWCPSMLPFRSYK A0A1U9IRU2 Capsid protein VP2 Senecavirus A 0.029870315999999997 1 LEVO DRVTTQTAGNTAINTQSSLGVLCAYVEDPTKSDPPSSSTDQPTTTFTAIDRWYTGRLNSWTKAVKTFSFQAVPLPGAFLS RQGGLNGGAFTATLHRHFLMKCGWQVQVQCNLTQFHQGALLVAMVPETTLDVKPDGKAKSLQELNEEQWVEMSDDYRTGK NMPFQSLGTYYRPPNWTWGPNFINPYQVTVFPHQILNARTSTSVDINVPYIGETPTQSSETQNSWTLLVMVLVPLDYKEG ATTDPEITFSVRPTSPYFNGLRNRYTAG A0A1U9IRU2 Capsid protein VP3 Senecavirus A 0.026353937999999997 1 LEVO GPIPTAPRENSLMFLSTLPDDTVPAYGNVRTPPVNYLPGEITDLLQLARIPTLMAFERVPEPVPASDTYVPYVAVPTQFD DRPLISFPITLSDPVYQNTLVGAISSNFANYRGCIQITLTFCGPMMARGKFLLSYSPPNGTQPQTLSEAMQCTYSIWDIG LNSSWTFVVPYISPSDYRETRAITNSVYSADGWFSLHKLTKITLPPDCPQSPCILFFASAGEDYTLRLPVDCNPSYVF A0A1U9IRU2 Capsid protein VP4 Senecavirus A 0.0059984669999999995 1 LEVO RGNNGNMTFNYYANTYQNSVDFSTSSSASGAGPGNSRGGLAGLLTNFSGILNPLGYLK A0A218L148 singleParticle particle 0.2 7.4 Phosphate Buffer Quantifoil R1.2/1.3 300 CARBON HOLEY 12.0 GLOW DISCHARGE ETHANE 100 293 FEI VITROBOT MARK IV
Blot force 0, 3 sec blotting time.
A homogenous sample containing full capsids
 FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.7 0.5 3.5 73000.0 NITROGEN FEI FALCON III (4k x 4k) 39.0 1 7457 3CJI 1 I 3.8 FSC 0.143 CUT-OFF RELION 1.4 6782 ANGULAR RECONSTITUTION RELION 1.4 ANGULAR RECONSTITUTION RELION 1.4 1 6782.0 RELION 1.4 emd_7772.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 596.39996 596.39996 596.39996 90.0 90.0 90.0 X Y Z -0.05108152 0.06383123 0.00009918771 0.004499039 1.42 1.42 1.42 0.012 AUTHOR Seneca Valley Virus-Anthrax Toxin Receptor 1 complex RIGID BODY FIT CC REAL 100.0