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            <header_release>2026-07-15</header_release>
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            <update>2026-08-12</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</funding_body>
                <code>R01-GM148607</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</funding_body>
                <code>R35-GM138206</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</funding_body>
                <code>1S10OD032471</code>
                <country>United States</country>
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        <title>CryoEM structure of Gluconacetobacter diazotrophicus MoFeP (C2 symmetry)</title>
        <authors_list>
            <author>Li Y</author>
            <author>Narehood SM</author>
            <author>Cook BD</author>
            <author>McGuire KL</author>
            <author>Tezcan FA</author>
            <author>Herzik Jr MA</author>
        </authors_list>
        <keywords>Nitrogenase, MoFeP, Gluconacetobacter diazotrophicus, molybdenum-iron protein, Oxidoreductase</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Li Y</author>
                    <author order="2">Narehood SM</author>
                    <author order="3">Cook BD</author>
                    <author order="4">McGuire KL</author>
                    <author order="5">Herzik Jr MA</author>
                    <author order="6">Tezcan FA</author>
                    <title>Structural and Functional Characterization of Heterologous Nitrogenase Complexes.</title>
                    <journal_abbreviation>Biochemistry</journal_abbreviation>
                    <country>US</country>
                    <volume>65</volume>
                    <first_page>2318</first_page>
                    <last_page>2329</last_page>
                    <year>2026</year>
                    <external_references type="PUBMED">42390130</external_references>
                    <external_references type="DOI">doi:10.1021/acs.biochem.6c00360</external_references>
                    <external_references type="ISSN">0006-2960</external_references>
                    <external_references type="CSD">0033</external_references>
                    <external_references type="ASTM">BICHAW</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
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                <pdb_id>10zl</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
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                <accession_id>EMD-75567</accession_id>
                <content_type>associated EM volume</content_type>
                <details>CryoEM structure of Gluconacetobacter diazotrophicus MoFeP (C2 symmetry)</details>
            </db_reference>
        </other_db_list>
    </crossreferences>
    <sample>
        <name>Heterotetrameric MoFeP from Gluconacetobacter diazotrophicus</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Heterotetrameric MoFeP from Gluconacetobacter diazotrophicus</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="272568">Gluconacetobacter diazotrophicus PA1 5</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.23</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Nitrogenase MoFe protein beta subunit NifK</name>
                <natural_source database="NCBI">
                    <organism ncbi="272568">Gluconacetobacter diazotrophicus PA1 5</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.057094351999999994</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MPQNVDKILDHAPLFREPEYQEMLAGKAKLENMPPADKVVEIADWTKSWEYREKNFARESLSVNPAKACQPLGAVFVASG
FERTMSFVHGSQGCVAYYRSHLSRHFKEPSSAVSSSMTEDAAVFGGLNNMVDGLANTYKLYDPKMIAVSTTCMAEVIGDD
LHAFIQTAKGKGSVPEEFDVPFAHTPAFVGSHVTGYDNMLKGILEHFWKGRTPVPNRSVNIIPGFDGFAVGNNRELKRIL
GMMGVQYTILSDVSDQFDTPSDGEYRMYDGGTKIEAARDAVNADYTISLQEYCTPKTLEYCQSFGQKTASFHYPLGIGAT
DDLLQKLSEISGKPVPQELEMERGRLVDALADSQAYLHGKTYAIYGDPDFVYGMARFILETGGEPKHCLATNGSKAWEAQ
MQELFDSSPFGVGCKAWGGKDLWHMRSLLATEKVDLLIGNSYGKYLERDTDTPLIRLMFPIFDRHHHHRFPVWGYQGALR
VLVTLLDKIFDKLDDDTIQAGVTDYSFDLTR</string>
                    <external_references type="UNIPROTKB">A9H5W8</external_references>
                </sequence>
                <ec_number>1.18.6.1</ec_number>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Nitrogenase MoFe protein alpha subunit NifD</name>
                <natural_source database="NCBI">
                    <organism ncbi="272568">Gluconacetobacter diazotrophicus PA1 5</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.056095452999999997</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MSLDEDKTNDSAFHARLIAEVLEAYPDKARKRRQKHLNVAGQAEAEAQDAGEEGVMLSECDVKSNVKSVPGVMTIRGCAY
AGSKGVVWGPVKDMVHISHGPVGCGQYSWSQRRNYYIGNTGVDSFVTMQFTSDFQEKDIVFGGDKKLEKIIDEIDELFPL
AKGISVQSECPIGLIGDDIEAVSRKKKKEIGKTIVPVRCEGFRGVSQSLGHHIANDAIRDWVFDGEDKHAAFETTPYDVN
VIGDYNIGGDAWSSRILLEEMGLRVVGNWSGDATLAEIERAPKAKLNLIHCYRSMNYICRHMEEKYNIPWTEYNFFGPSQ
IAASLRKIAALFDEKIQEGAERVIAKYQPLVDAVIEKFRPRLAGKKVMLYVGGLRPRHVVNAYNDLGMEIVGTGYEFGHN
DDYQRTGHYVREGTLIYDDVTGYELEKFIEGIRPDLVGSGIKEKYPVQKMGIPFRQMHSWDYSGPYHGYDGFAIFARDMD
LAINNPVWSMFKAPWKNAA</string>
                    <external_references type="UNIPROTKB">A9H5W5</external_references>
                </sequence>
                <ec_number>1.18.6.1</ec_number>
            </protein_or_peptide>
            <ligand macromolecule_id="3">
                <name>FE (III) ION</name>
                <molecular_weight>
                    <theoretical units="MDa">5.5845e-05</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <formula>FE</formula>
            </ligand>
            <ligand macromolecule_id="4">
                <name>FE(8)-S(7) CLUSTER</name>
                <molecular_weight>
                    <theoretical units="MDa">0.000671215</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <formula>CLF</formula>
            </ligand>
            <ligand macromolecule_id="5">
                <name>3-HYDROXY-3-CARBOXY-ADIPIC ACID</name>
                <molecular_weight>
                    <theoretical units="MDa">0.00020615</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <formula>HCA</formula>
            </ligand>
            <ligand macromolecule_id="6">
                <name>iron-sulfur-molybdenum cluster with interstitial carbon</name>
                <molecular_weight>
                    <theoretical units="MDa">0.000787451</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <formula>ICS</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">6.9</concentration>
                    <buffer>
                        <ph>8.0</ph>
                        <component>
                            <concentration units="mM">20.0</concentration>
                            <formula>C4H11NO3</formula>
                            <name>Tris</name>
                        </component>
                        <component>
                            <concentration units="mM">25.0</concentration>
                            <formula>NaCl</formula>
                            <name>Sodium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">10.0</concentration>
                            <formula>Na2S2O4</formula>
                            <name>Sodium dithionite</name>
                        </component>
                        <details>Solutions were prepared, filtered, and degassed to Ar immediately prior to the experiment.</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil Active R1.2/0.8</model>
                        <material>COPPER</material>
                        <mesh>300</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <time units="s">45</time>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">75</chamber_humidity>
                        <chamber_temperature units="K">298</chamber_temperature>
                        <instrument>SPT LABTECH CHAMELEON</instrument>
                        <details>Samples were covered by Al's oil and frozen with the SPT Labtech chameleon.. </details>
                    </vitrification>
                    <details>Homogeneous Gd-MoFeP purified from a gel filtration column(SEC).</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>TFS KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">1.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.5</nominal_defocus_max>
                    <nominal_magnification>130000.0</nominal_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <coma_free/>
                    </alignment_procedure>
                    <specialist_optics>
                        <energy_filter>
                            <name>TFS Selectris X</name>
                            <slit_width units="eV">10</slit_width>
                        </energy_filter>
                    </specialist_optics>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON IV (4k x 4k)</film_or_detector_model>
                            <digitization_details>
                                <dimensions>
                                    <width units="pixel">4096</width>
                                    <height units="pixel">4096</height>
                                </dimensions>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>2371</number_real_images>
                            <average_exposure_time units="s">5.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">60.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>674977</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>cryoSPARC</name>
                        </software>
                    </software_list>
                    <type>PHASE FLIPPING AND AMPLITUDE CORRECTION</type>
                </ctf_correction>
                <startup_model type_of_model="EMDB MAP">
                    <emdb_id>EMD-26757</emdb_id>
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                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C2</point_group>
                    </applied_symmetry>
                    <algorithm>FOURIER SPACE</algorithm>
                    <resolution units="Å" res_type="BY AUTHOR">2.15</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>cryoSPARC</name>
                        </software>
                    </software_list>
                    <number_images_used>211731</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
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        </structure_determination>
    </structure_determination_list>
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                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
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                <label>::::EMDATABANK.org::::EMD-75567::::</label>
                <annotation_details>Gluconacetobacter diazotrophicus MoFeP (C2 symmetry) half map</annotation_details>
            </half_map>
            <half_map format="CCP4" size_kbytes="359662">
                <file>emd_75567_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>448</col>
                    <row>448</row>
                    <sec>448</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>448</x>
                    <y>448</y>
                    <z>448</z>
                </spacing>
                <cell>
                    <a units="Å">418.88</a>
                    <b units="Å">418.88</b>
                    <c units="Å">418.88</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.2934049</minimum>
                    <maximum>1.2934477</maximum>
                    <average>0.00011958628</average>
                    <std>0.022290014</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.935</x>
                    <y units="Å">0.935</y>
                    <z units="Å">0.935</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-75567::::</label>
                <annotation_details>Gluconacetobacter diazotrophicus MoFeP (C2 symmetry) half map</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
