2026-09-16 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY COORDINATE_REPLACEMENT AUTHOR Atomic clashes STRUCTURE_SUMMARY atom_site em_3d_reconstruction em_admin em_software em_start_model pdbx_contact_author pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_assembly pdbx_struct_oper_list pdbx_struct_sheet_hbond pdbx_unobs_or_zero_occ_residues pdbx_validate_close_contact pdbx_validate_torsion refine_ls_restr struct_asym struct_conf struct_mon_prot_cis struct_ref_seq struct_sheet struct_sheet_order struct_sheet_range _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _em_3d_reconstruction.resolution_method _em_admin.last_update _em_software.category _em_software.fitting_id _em_software.image_processing_id _em_software.imaging_id _em_software.name _em_software.version _em_start_model.type _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_struct_assembly.details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_oper_list.symmetry_operation _pdbx_unobs_or_zero_occ_residues.auth_seq_id _refine_ls_restr.dev_ideal _struct_asym.entity_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_omega_angle _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end _struct_sheet.number_strands EXPERIMENTAL_SUMMARY em_3d_reconstruction em_admin em_software em_start_model struct_ref_seq _em_3d_reconstruction.resolution_method _em_admin.last_update _em_software.category _em_software.fitting_id _em_software.image_processing_id _em_software.imaging_id _em_software.name _em_software.version _em_start_model.type _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end RCSB RCSB 2025-12-19 2026-07-29 2026-07-29 2026-09-16 National Science Foundation (NSF, United States) MCB-1934291 United States National Science Foundation (NSF, United States) DBI-2018942 United States National Science Foundation (NSF, United States) MCB 2048095 United States Composite map of the bGDH di-hexamer in liganded form Shan Z Lyumkis D Glutamate dehydrogenase Amino acid metabolism filament allosteric regulation, UNKNOWN FUNCTION Shan Z Darwish NI Rivero-Gamez A Strutzenberg TS Lyumkis D Horton NC Structural Mechanism of Filamentation Induced Dampening of GTP Inhibition of Glutamate Dehydrogenase. Biorxiv US 2026 42465363 doi:10.64898/2026.07.06.736867 2692-8205 EMD-74578 consensus EM volume
Consensus map of the bGDH di-hexamer in liganded form
 EMD-74579 focused EM volume
Constituent map A of the bGDH di-hexamer in liganded form
 EMD-74580 focused EM volume
Constituent map B of the bGDH di-hexamer in liganded form
 9zqt FULLOVERLAP EMDB EMD-74578 consensus EM volume
Consensus map of the bGDH di-hexamer in liganded form
 EMDB EMD-74579 focused EM volume
Constituent map A of the bGDH di-hexamer in liganded form
 EMDB EMD-74580 focused EM volume
Constituent map B of the bGDH di-hexamer in liganded form
 EMDB EMD-74581 associated EM volume
Composite map of the bGDH di-hexamer in liganded form
 Bovine glutamate dehydrogenase Bovine glutamate dehydrogenase 0 1 Bos taurus (Bovine) 0.78 Glutamate dehydrogenase 1, mitochondrial Bos taurus 0.061593832 12 LEVO MYRYLGEALLLSRAGPAALGSASADSAALLGWARGQPAAAPQPGLVPPARRHYSEAAADREDDPNFFKMVEGFFDRGASI VEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDE VKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTY ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYL HRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKI IAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGK HGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT P00366 1.4.1.3 GUANOSINE-5'-TRIPHOSPHATE 0.0005231799999999999 12 GTP 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE 0.000665441 24 NAI GAMMA-L-GLUTAMIC ACID 0.000147129 6 GGL singleParticle filament 0.5 7.5 UltrAuFoil R1.2/1.3 GOLD 300 GOLD HOLEY ETHANE 90 277 HOMEMADE PLUNGER TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.6 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 (6k x 4k) 3.0 44.8 1 PHASE FLIPPING AND AMPLITUDE CORRECTION
An atomic bGDH model derived from AlphaFold3 prediction
 3.5 FSC 0.143 CUT-OFF UCSF Chimera 97554 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_74581.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 420.86398 420.86398 420.86398 90.0 90.0 90.0 X Y Z -0.09447529 0.67673844 0.004099136 0.014880528 1.3152 1.3152 1.3152 0.08 AUTHOR The composite map of dimer-of-hexameric bovine glutamate dehydrogenase in liganded form FLEXIBLE FIT REAL