2018-03-14 REL RCSB RCSB RCSB 2017-12-25 2018-01-24 2018-01-31 2018-03-14 Cryo-EM structure of CENP-A nucleosome complexed with CENP-LN Li XR Wang CL Tian T Zang JY Zhou ZH Tian T Li X Liu Y Wang C Liu X Bi G Zhang X Yao X Zhou ZH Zang J Molecular basis for CENP-N recognition of CENP-A nucleosome on the human kinetochore. Cell Res. CN 28 374 378 2018 29350209 doi:10.1038/cr.2018.13 1748-7838 EMD-7318 associated EM volume CENP-A NCP/CENP-LN complex CENP-A NCP/CENP-LN complex 0 1 2 3 4 11 12 13 14
CENP-A nucleosome complexed with CENP-LN
Homo sapiens CENP-A NCP 1 1 2 3 4 13 14 Escherichia coli BL21 CENP-NL complex 1 11 12 Spodoptera frugiperda Histone H3-like centromeric protein A (CENP-A) Homo sapiens Escherichia coli BL21 LEVO MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEGLG Histone H4 Homo sapiens Escherichia coli BL21 LEVO MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG Histone H2A Homo sapiens Escherichia coli BL21 LEVO MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK Histone H2B Homo sapiens Escherichia coli BL21 LEVO MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK Centromere protein N (CENP-N) Homo sapiens Spodoptera frugiperda LEVO MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKRASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVTVSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALTIASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHENIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSPHLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK Centromere protein L (CENP-L) Homo sapiens Spodoptera frugiperda LEVO MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVDPQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVIFSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE DNA (147-MER) Homo sapiens ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCACATATATACATCCGAT DNA DNA (147-MER) Homo sapiens ATCGGATGTATATATGTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT DNA singleParticle particle 0.2 7.4 Quantifoil R1.2/1.3 COPPER 300 GLOW DISCHARGE ETHANE 100 293 FEI VITROBOT MARK II
FEI TITAN FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 55.0 FEI TECNAI 20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 GATAN K2 SUMMIT (4k x 4k) COUNTING 46.0 1 Gctf 1.06 CTFFIND 4.1.5
Gctf & CTFFIND4
The H2B-K34-ubiquitylation nucleosome single particle reconstruction density achieved in the lab was low-pass filtered and served as the initial model.
 C1 5.8 FSC 0.143 CUT-OFF RELION 2.1 130598 ANGULAR RECONSTITUTION RELION 2.1 ANGULAR RECONSTITUTION RELION 2.1 emd_7318.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 168 168 168 0 0 0 168 168 168 179.76001 179.76001 179.76001 90.0 90.0 90.0 X Y Z -0.060965627 0.12632711 0.0014361275 0.008412439 1.07 1.07 1.07 0.01 AUTHOR Cryo-EM structure of CENP-A nucleosome complexed with CENP-LN