2026-07-01 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY RCSB RCSB 2025-09-18 2026-07-01 2026-07-01 2026-07-01 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 5SC1GM139701 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 5G12MD007603-30 United States Simons Foundation 349247 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM103310 United States Department of Defense (DOD, United States) W81XH19C0169 United States Structure of the Adenovirus-7 VLP, Class 4 Khayat R Madoo K Adenovirus, vaccine, VLP, VIRUS LIKE PARTICLE Madoo K Mazboudi R Islam ZM Luo J Kuschner RA Gottlieb P Dennehy JJ Abzalimov RR Galarza JM Khayat R Structure of Human adenovirus 7 virus-like particles, a platform for developing nanotherapeutics and studying capsid assembly. Proc.Natl.Acad.Sci.USA US 123 e2526969123 e2526969123 2026 42301791 doi:10.1073/pnas.2526969123 1091-6490 0040 PNASA6 9ych FULLOVERLAP EMDB EMD-72772 associated EM volume
Structure of the Adenovirus-7 VLP, Class 4.
 Adenovirus 7 Virus-like particles Adenovirus 7 Virus-like particles 0 1 2 3 4 5 6
Adenovirus 7 Virus-like particles
Human adenovirus 7 18.2 Pre-protein VI Human adenovirus 7 0.02717884 8 Homo sapiens LEVO MEDINFSSLAPRHGTRPYMGTWSDIGTSQLNGGAFNWSSIWSGLKNFGSTVKTYGNKAWNSSTGQALRNKLKEQNFQQKV VDGIASGINGVVDLANQAVQKQINSRLDPPPATPGEMEVEEELPPLEKRGDKRPRPELEQTLVTRADEPPSYEEAVKLGM PTTRPVAHMATGVMKPSQSHRPATLDLPPPPASAALVPKPVATRKPTAVQPVAVARPRPGGTPRPKANWQSTLNSIVGLG VQSVKRRRCY Q5EY64 Hexon protein Human adenovirus 7 0.105807125 12 Homo sapiens LEVO MATPSMMPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSMGNKFRNPTVAPTHDVTTDRSQRLMLRFVPVDREDNTYSY KVRYTLAVGDNRVLDMASTFFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNTSQWIVTAGEERAVTTTTNTFGIASMKGD NITKEGLEIGKDITADNKPIYADKTYQPEPQVGEESWTDTDGTNEKFGGRALKPATKMKPCYGSFARPTNIKGGQAKNRK VKPTEGDVETEEPDIDMEFFDGREAADAFSPEIVLYTENVNLETPDSHVVYKPGTSDDNSHANLGQQAMPNRPNYIGFRD NFVGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNQAVDSYDPDVRIIENHGIEDELP NYCFPLDGIGPAKTYQGIKSKDNGWEKDDNVSKSNEIAIGNNQAMEINIQANLWRSFLYSNVALYLPDVYKYTPTNITLP ANTNTYEYMNGRVVSPSLVDSYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAVKNLLLL PGSYTYEWNFRKDVNMVLQSSLGNDLRTDGATISFTSINLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYP IPANATNIPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKKVSIMFDSSVSWPGND RLLSPNEFEIKRTVDGEGYNVAQCNMTKDWFLVQMLANYNIGYQGFYIPEGYKDRMYSFFRNFQPMSRQVVDEVNYTDYK AVTLPYQHNNSGFVGYLAPTMRQGEPYPANYPYPLIGTTAVKSVTQKKFLCDRTMWRIPFSSNFMSMGALTDLGQNMLYA NSAHALDMTFEVDPMDEPTLLYLLFEVFDVVRVHQPHRGVIEAVYLRTPFSAGNATT P36851 Pre-hexon-linking protein IIIa Human adenovirus 7 0.06579837499999999 1 Homo sapiens LEVO MEQQQAPDPAMRAALQSQPSGINSSDDWTQAMQRIMALTTRNPEAFRQQPQANRLSAILEAVVPSRSNPTHEKVLAIVNA LVENKAIRPDEAGLVYNALLERVARYNSSNVQTNLDRMVTDVREAVSQRERFQRDANLGSLVALNAFLSTQPANVPRGQQ DYTNFLSALRLMVAEVPQSEVYQSGPDYFFQTSRQGLQTVNLTQAFKNLKGLWGVHAPVGDRATVSSLLTPNSRLLLLLV SPFTDSGSIDRNSYLGYLLNLYREAIGQSQVDEQTYQEITQVSRALGQEDTGSLEATLNFLLTNRSQKIPPQYALTAEEE RILRYVQQSVGLFLMQEGATPTAALDMTARNMEPSMYASNRPFINKLLDYLHRAAAMNSDYFTNAILNPHWLPPPGFYTG EYDMPDPNDGFLWDDVDSSIFSPPPGYTVWKKEGGDTRHSSVSLSRTAGAAATVPEAASPFPSLPFSLNSVRSSELGRIT RPRLMGEDEYLNDSLLRPEREKNFPNNGIESLVDKMSRWKTYAQDHRDEPKILGATSRPTRRRQRHDRQMGLVWDDEDSA DDSSVLDLGGRGGGNPFAHLRPRFGRML Q5EY68 Penton protein Human adenovirus 7 0.061941542999999995 1 Homo sapiens LEVO MRRRAVLGGAMVYPEGPPPSYESVMQQQAAMIQPPLEAPFVPPRYLAPTEGRNSIRYSELSPLYDTTKLYLVDNKSADIA SLNYQNDHSNFLTTVVQNNDFTPTEASTQTINFDERSRWGGQLKTIMHTNMPNVNEYMFSNKFKARVMVSRKAPEGVIVN DTYDHKEDILKYEWFEFTLPEGNFSATMTIDLMNNAIIDNYLEIGRQNGVLESDIGVKFDTRNFRLGWDPETKLIMPGVY TYEAFHPDIVLLPGCGVDFTESRLSNLLGIRKRHPFQEGFKIMYEDLEGGNIPALLDVTAYEESKKDTTTETTTLAVAEE TSEDDNITRGDTYITEKQKREAAAAEVKKELKIQPLEKDSKSRSYNVLEDKINTAYRSWYLSYNYGNPEKGIRSWTLLTT SDVTCGAEQVYWSLPDMMQDPVTFRSTRQVNNYPVVGAELMPVFSKSFYNEQAVYSQQLRQATSLTHVFNRFPENQILIR PPAPTITTVSENVPALTDHGTLPLRSSIRGVQRVTVTDARRRTCPYVYKALGIVAPRVLSSRTF Q9JFT6 Hexon-interlacing protein IX Human adenovirus 7 0.013125939
Due to the low quality of map in certain regions, the identites of some of the amino acids in the model were left as unknown (UNK).
4 Homo sapiens LEVO MSGSASFEGGVFSPYLTGRLPPWAGVRQNVMGSTVDGRPVQPANSSTLTYATLSSSPLDAAAAAAATAAANTILGMGYYG SIVANSSSSNN(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)AKSK P68971 Pre-hexon-linking protein VIII Human adenovirus 7 0.024902814 2 Homo sapiens LEVO MSKEIPTPYMWSYQPQMGLAAGASQDYSTRMNWLSAGPSMISRVNDIRAYRNQLLLEQSALTTTPRQHLNPRNWPAALVY QETPAPTTVLLPRDAQAEVHMTNAGVQLAGGSALCRHRPQQSIKRLVIRGRGIQLNDESVSSSLGLRPDGVFQIAGCGRS SFTPRQAVLTLESSSSQPRSGGIGTLQFVEEFTPSVYFNPFSGSPGQYPDEFIPNFDAISESVDGYD Q5EY56 singleParticle particle 1 7.4 Quantifoil Active R2/1 COPPER 400 CARBON HOLEY ARRAY PLASMA CLEANING AIR ETHANE-PROPANE 100 277 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.5 2.5 2.6 81000.0 81000.0 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 BIOQUANTUM (6k x 4k) 5760 4092 1 13608 50.0 53.35
Not all images had particles.
 1 cryoSPARC 4.13 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.7 FSC 0.143 CUT-OFF RELION 4.0 137863 MAXIMUM LIKELIHOOD cryoSPARC 4.13 MAXIMUM LIKELIHOOD RELION 4 6 RELION 4 emd_72772.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 233 426 271 95 1 93 271 426 233 293.49298 461.35797 252.33899 90.0 90.0 90.0 Z Y X -6.6250486 10.306013999999999 -0.000000000001593 1.0 1.083 1.083 1.083 1.0 AUTHOR AlphaFold in silico model FLEXIBLE FIT Cross-correlation coefficient REAL emd_72772_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 476.52 476.52 476.52 90.0 90.0 90.0 X Y Z -0.027336648 0.035479885 -0.000030744945 0.0030795187 1.083 1.083 1.083 AUTHOR emd_72772_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 476.52 476.52 476.52 90.0 90.0 90.0 X Y Z -0.027783887 0.0354352 -0.000030499654 0.0030986439 1.083 1.083 1.083 AUTHOR