2026-07-15 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY RCSB RCSB 2025-09-06 2026-07-15 2026-07-15 2026-07-15 Other private Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader Zhu J Pagarigan BE Fang W Cereblon, degrader, DDB1, NSD2, PWWP1, LDD, LIGASE Hu B Edwards J Modi H Gamez J Echeagaray OE Hess K Ren Y Anderson D Larrayoz M Zhu J Johnson SA Deb G Jankeel D Janardhanan P Leisten J Peng S Christoforou A Stong N Fontanillo C Bjorklund CC Hagner PR Gandhi AK Martinez-Climent JA Narla RK Lopez-Girona A Rolfe M Bence N Mortensen DS Groocock L NSD2 Degradation Remediates the Oncogenic Cistrome in t(4;14) Multiple Myeloma. Blood US 2026 42371798 doi:10.1182/blood.2025031998 1528-0020 9y61 FULLOVERLAP EMDB EMD-72526 associated EM volume
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
 Ternary complex NSD2-PWWP1:NSD2-LDD:CRBN:DDB1 Ternary complex NSD2-PWWP1:NSD2-LDD:CRBN:DDB1 0 1 2
NSD2 PWWP1 domain, CRBN/DDB1 complex, and NSD2-LDD in 1:1:3 ratio
Homo sapiens 0.166 Histone-lysine N-methyltransferase NSD2 Homo sapiens 0.019818706999999998 1 Escherichia coli BL21(DE3) LEVO MAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKS LVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA KEAGIAAEHHHHHH O96028 2.1.1.357 Protein cereblon Homo sapiens 0.05358198399999999 1 Spodoptera frugiperda LEVO MSYYHHHHHHDYDIPTTGLVPRGSMMAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPT SHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQF GTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSR EDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLR IQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPS TEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDKVILCL Q96SW2 1-(5-{9-[(4-{2-[(2S,3R)-2-(3,5-dichloro-4-fluorophenyl)-5-oxomorpholin-3-yl]ethyl}piperazin-1-yl)methyl]-3-azaspiro[5.5]undecane-3-carbonyl}-2-methylphenyl)-1,3-diazinane-2,4-dione 0.000771748 1 A1CSQ ZINC ION 6.5409e-05 1 ZN singleParticle particle 3.5 7.0 10.0 (2-(4-(2-hydroxyethyl)piperazin-1-yl)ethanesulfonic acid) 240.0 NaCl sodium chloride 3.0 tris(2-carboxyethyl)phosphine 0.5 Dimethyl sulfoxide 0.001 Lauryl Maltose Neopentyl Glycol Quantifoil R0.6/1 GOLD 300 GOLD HOLEY GLOW DISCHARGE ETHANE 100 278 FEI VITROBOT MARK IV
blot time 4 sec blot force 4.
TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.5 2.5 75000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON IV (4k x 4k) 1 14049 3.49 33.85 1 14824032 cryoSPARC PHASE FLIPPING AND AMPLITUDE CORRECTION 8D81 1 C1 FOURIER SPACE 3.1 FSC 0.143 CUT-OFF cryoSPARC 127545 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD cryoSPARC emd_72526.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 271.36 271.36 271.36 90.0 90.0 90.0 X Y Z -0.11203376 0.24757953 -0.00031984286 0.0035611743 1.06 1.06 1.06 0.0435 AUTHOR 8D81 PDB experimental model RIGID BODY FIT REAL emd_72526_msk_1.map emd_72526_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 271.36 271.36 271.36 90.0 90.0 90.0 X Y Z -0.13443439 0.25600484 -0.00004846223 0.009917269 1.06 1.06 1.06 AUTHOR emd_72526_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 271.36 271.36 271.36 90.0 90.0 90.0 X Y Z -0.13125135 0.27157134 -0.00004680001 0.009908669 1.06 1.06 1.06 AUTHOR