2024-11-20 REL RCSB RCSB RCSB 2017-09-25 2017-11-08 2017-11-08 2024-11-20 National Institutes of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR) DE025567 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM071940 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI094386 United States National Institutes of Health/National Cancer Institute (NIH/NCI) CA091791 United States National Institutes of Health/National Cancer Institute (NIH/NCI) CA177322 United States National Institutes of Health/Office of the Director 1S10OD018111 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 1U24GM116792 United States National Science Foundation (NSF, United States) DBI-1338135 United States CryoEM structure and atomic model of the Kaposi's sarcoma-associated herpesvirus capsid Dai XH Gong DY human herpesvirus 8, human tumor virus, dsDNA virus capsid assembly, HK97-like fold, VIRUS Dai X Gong D Lim H Jih J Wu TT Sun R Zhou ZH Structure and mutagenesis reveal essential capsid protein interactions for KSHV replication. Nature UK 553 521 525 2018 29342139 doi:10.1038/nature25438 1476-4687 0006 NATUAS 6b43 FULLOVERLAP Human herpesvirus 8 Human herpesvirus 8 0 1 2 3 4
KSHV lytic replication was induced in an iSLK-puro cell line harboring the KSHV-BAC16 plasmid.
Human herpesvirus 8 JSC-1 Homo sapiens 200 capsid 1300.0 16 VIRION STRAIN true false Major capsid protein Human herpesvirus 8 0.153574188
Coded by gene ORF25.
16 LEVO MEATLEQRPFPYLATEANLLTQIKESAADGLFKSFQLLLGKDAREGSVRFEALLGVYTNVVEFVKFLETALAAACVNTEF KDLRRMIDGKIQFKISMPTIAHGDGRRPNKQRQYIVMKACNKHHIGAEIELAAADIELLFAEKETPLDFTEYAGAIKTIT SALQFGMDALERGLVDTVLAVKLRHAPPVFILKTLGDPVYSERGLKKAVKSDMVSMFKAHLIEHSFFLDKAELMTRGKQY VLTMLSDMLAAVCEDTVFKGVSTYTTASGQQVAGVLETTDSVMRRLMNLLGQVESAMSGPAAYASYVVRGANLVTAVSYG RAMRNFEQFMARIVDHPNALPSVEGDKAALADGHDEIQRTRIAASLVKIGDKFVAIESLQRMYNETQFPCPLNRRIQYTY FFPVGLHLPVPRYSTSVSVRGVESPAIQSTETWVVNKNNVPLCFGYQNALKSICHPRMHNPTQSAQALNQAFPDPDGGHG YGLRYEQTPNMNLFRTFHQYYMGKNVAFVPDVAQKALVTTEDLLHPTSHRLLRLEVHPFFDFFVHPCPGARGSYRATHRT MVGNIPQPLAPREFQESRGAQFDAVTNMTHVIDQLTIDVIQETAFDPAYPLFCYVIEAMIHGQEEKFVMNMPLIALVIQT YWVNSGKLAFVNSYHMVRFICTHMGNGSIPKEAHGHYRKILGELIALEQALLKLAGHETVGRTPITHLVSALLDPHLLPP FAYHDVFTDLMQKSSRQPIIKIGDQNYDNPQNRATFINLRGRMEDLVNNLVNIYQTRVNEDHDERHVLDVAPLDENDYNP VLEKLFYYVLMPVCSNGHMCGMGVDYQNVALTLTYNGPVFADVVNAQDDILLHLENGTLKDILQAGDIRPTVDMIRVLCT SFLTCPFVTQAARVITKRDPAQSFATHEYGKDVAQTVLVNGFGAFAVADRSREAAETMFYPVPFNKLYADPLVAATLHPL LANYVTRLPNQRNAVVFNVPSNLMAEYEEWHKSPVAAYAASCQATPGAISAMVSMHQKLSAPSFICQAKHRMHPGFAMTV VRTDEVLAEHILYCSRASTSMFVGLPSVVRREVRSDAVTFEITHEIASLHTALGYSSVIAPAHVAAITTDMGVHCQDLFM IFPGDAYQDRQLHDYIKMKAGVQTGPPGNRMDHVGYAAGVPRCENLPGLSHGQLATCEIIPTPVTSDVAYFQTPSNPRGR AACVVSCDAYSNESAERLLYDHSIPDPAYECRSTNNPWASQRGSLGDVLYNITFRQTALPGMYSPCRQFFHKEDIMRYNR GLYTLVNEYSARLAGAPATSTTDLQYVVVNGTDVFLDQPCHMLQEAYPTLAASHRVMLDEYMSNKQTHAPVHMGQYLIEE VAPMKRLLKLGNKVVY D0UZN7 Small capsomere-interacting protein Human herpesvirus 8 0.018597824
Coded by gene ORF65.
15 LEVO MSNFKVRDPVIQERLDHDYAHHPLVARMNTLDQGNMSQAEYLVQKRHYLVFLIAHHYYEAYLRRMGGIQRRDHLQTLRDQ KPRERADRVSAASAYDAGTFTVPSRPGPASGTTPGGQDSLGVSGSSITTLSSGPHSLSPASDILTTLSSTTETAAPAVAD ARKPPSGKKK Q76RF4 Triplex capsid protein 1 Human herpesvirus 8 0.03637483999999999
Coded by gene ORF62. It is the monomer in the heterotrimeric triplex structure.
5 LEVO MKVQAENAARLGRQVLGLLPPPTHRVSLTRGPEFARGVRDLLSKYAASTRPTVGSLHEALRQAPFRQPTYGDFLVYSQTF SPQEPLGTFLFSFKQEDNGSSMDMLLTPTSLFMLSGMEAAKAPQTHKVAGVWYGSGSGLADFIPNLSELMDTGEFHTLLT PVGPMVQSVHSTFVTKVTSAMKGVGLARDEPRAHVGLTLPCDMLVDLDESCPMVQRREPAGLNVTIYASLVYLRVNQRPS MALTFFQSGKGFAEVVAMIKDHFTDVIRTKYIQLRHELYINRLVFGAVCTLGTVPFDSHPVHQSLNVKGTSLPVLVFANF EAACGPWTVFL Q76RF6 Triplex capsid protein 2 Human herpesvirus 8 0.034278473
Coded by gene ORF26. Forms the dimer in the heterotrimeric triplex structure.
10 LEVO MALDKSIVVNLTSRLFADELAALQSKIGSVLPLGDCHRLQNIQALGLGCVCSRETSPDYIQIMQYLSKCTLAVLEEVRPD SLRLTRMDPSDNLQIKNVYAPFFQWDSNTQLAVLPPLFSRKDSTIVLESNGFDIVFPMVVPQQLGHAILQQLLVYHIYSK ISAGAPGDVNMAELDLYTTNVSFMGRTYRLDVDNTDPRTALRVLDDLSMYLCILSALVPRGCLRLLTALVRHDRHPLTEV FEGVVPDEVTRIDLDQLSVPDDITRMRVMFSYLQSLSSIFNLGPRLHVYAYSAETLAASCWYSPR C7E5A9 singleParticle particle 7.4 PBS phosphate buffered saline Quantifoil R2/1 COPPER 200 CARBON HOLEY ARRAY PLASMA CLEANING OTHER ETHANE 298 HOMEMADE PLUNGER
The sample was manually blotted and frozen with a homemade plunger..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 2.0 2.0 14000.0 24271.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 79.0 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 7676 7420 1-26 3 8007 13.0 25.0 1 44343
Particles were boxed with ETHAN, and then manually examined.
 EMD-6038 I FOURIER SPACE 4.2 FSC 0.143 CUT-OFF 25315 COMMON LINE IMIRS COMMON LINE IMIRS emd_7047.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1280 1280 1280 -640 -640 -640 1280 1280 1280 1318.3999 1318.3999 1318.3999 90.0 90.0 90.0 X Y Z -11.596477500000001 15.720491000000001 0.008491504 1.0703465 1.03 1.03 1.03 2.5 AUTHOR CryoEM structure and atomic model of the Kaposi's sarcoma-associated herpesvirus capsid