<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_0/emdb.xsd" emdb_id="EMD-7029" version="3.0.2.0">
    <admin>
        <current_status>
            <date>2020-11-25</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-09-15</deposition>
            <header_release>2017-10-11</header_release>
            <map_release>2017-10-11</map_release>
            <update>2020-11-25</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</funding_body>
                <code>R01 GM030598</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>American Heart Association</funding_body>
                <code>15PRE25090150</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>NIH/NIAMS</funding_body>
                <code>R01 AR014317</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>NIH/Office of the Director</funding_body>
                <code>S10 OD018142</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>NIH/NCRR</funding_body>
                <code>S10 RR25080</code>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>CryoEM map from poorly ordered myosin thick filaments isolated from asynchronous flight muscle of the large waterbug Lethocerus indicus</title>
        <authors_list>
            <author>Taylor KA</author>
            <author>Taylor D</author>
            <author>Hu Z</author>
            <author>Edwards RJ</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Hu Z</author>
                    <author order="2">Taylor DW</author>
                    <author order="3">Edwards RJ</author>
                    <author order="4">Taylor KA</author>
                    <title>Coupling between myosin head conformation and the thick filament backbone structure.</title>
                    <journal_abbreviation>J. Struct. Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>200</volume>
                    <first_page>334</first_page>
                    <last_page>342</last_page>
                    <year>2017</year>
                    <external_references type="PUBMED">28964844</external_references>
                    <external_references type="DOI">doi:10.1016/j.jsb.2017.09.009</external_references>
                    <external_references type="ISSN">1095-8657</external_references>
                    <external_references type="CSD">0803</external_references>
                    <external_references type="ASTM">JSBIEM</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-3301</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>EMD-3301 is the volume derived from 3D image reconstruction of the best ordered filaments from the same image data from which the worst ordered filament volume of this deposition was obtained. The best ordered structure is described in Z. Hu, D. W. Taylor, M. K. Reedy, R. J. Edwards, K. A. Taylor, Structure of myosin filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Angstrom resolution. Sci. Adv. 2, e1600058 (2016).</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-7029</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Lethocerus flight muscle myosin filament</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Lethocerus flight muscle myosin filament</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="212017">Lethocerus indicus</organism>
                    <organ>Dorsal longitudinal flight muscle</organ>
                    <tissue>striated muscle</tissue>
                    <organelle>myofibril</organelle>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>6.8</ph>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/1</model>
                        <material>COPPER</material>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY ARRAY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>PLASMA CLEANING</type>
                            <atmosphere>OTHER</atmosphere>
                        </pretreatment>
                        <details>Gatan Solarus 950.M plasma cleaner</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">295</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <details></details>
                    </vitrification>
                    <details>All specimen and sample preparation details may be found in

Z. Hu, D. W. Taylor, M. K. Reedy, R. J. Edwards, K. A. Taylor, Structure of myosin
filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Angstrom resolution. Sci. Adv. 2,
e1600058 (2016).

Can also be found in the Specimen section of EMD-3301</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="µm">3.0</nominal_defocus_max>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <details>All  data collection details may be found in

Z. Hu, D. W. Taylor, M. K. Reedy, R. J. Edwards, K. A. Taylor, Structure of myosin
filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Angstrom resolution. Sci. Adv. 2,
e1600058 (2016).

Can also be found in the Specimen section of EMD-3301</details>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>DIRECT ELECTRON DE-20 (5k x 3k)</film_or_detector_model>
                            <detector_mode>INTEGRATING</detector_mode>
                            <digitization_details>
                                <frames_per_image>1-48</frames_per_image>
                            </digitization_details>
                            <average_exposure_time units="s">1.5</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">65.0</average_electron_dose_per_image>
                            <details>All specimen and sample preparation details may be found in

Z. Hu, D. W. Taylor, M. K. Reedy, R. J. Edwards, K. A. Taylor, Structure of myosin
filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Angstrom resolution. Sci. Adv. 2,
e1600058 (2016).

Can also be found in the Specimen section of EMD-3301</details>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <details>All specimen and sample preparation details may be found in

Z. Hu, D. W. Taylor, M. K. Reedy, R. J. Edwards, K. A. Taylor, Structure of myosin
filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Angstrom resolution. Sci. Adv. 2,
e1600058 (2016).

Can also be found in the Specimen section of EMD-3301</details>
                <particle_selection>
                    <number_selected>100000</number_selected>
                    <details>All specimen and sample preparation details may be found in

Z. Hu, D. W. Taylor, M. K. Reedy, R. J. Edwards, K. A. Taylor, Structure of myosin
filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Angstrom resolution. Sci. Adv. 2,
e1600058 (2016).

Can also be found in the Specimen section of EMD-3301</details>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>ACE, CTFFIND3</name>
                        </software>
                    </software_list>
                    <details>All specimen and sample preparation details may be found in

Z. Hu, D. W. Taylor, M. K. Reedy, R. J. Edwards, K. A. Taylor, Structure of myosin
filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Angstrom resolution. Sci. Adv. 2,
e1600058 (2016).

Can also be found in the Specimen section of EMD-3301</details>
                </ctf_correction>
                <startup_model type_of_model="OTHER">
                    <details>Map from EMD-3301 low pass filtered to 60 angstrom</details>
                </startup_model>
                <final_reconstruction>
                    <number_classes_used>2</number_classes_used>
                    <applied_symmetry>
                        <point_group>C4</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">6.4</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.2</version>
                            <processing_details>IHRSR implementation by Clemens et al., Cell 160, 940?951 (2015).</processing_details>
                        </software>
                    </software_list>
                    <number_images_used>50000</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>NOT APPLICABLE</type>
                    <software_list>
                        <software>
                            <name>EMAN</name>
                            <processing_details>STARTCSYM routine, which uses the common line method</processing_details>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.2</version>
                            <processing_details>IHRSR implementation by Clemens et al., Cell 160, 940?951 (2015).</processing_details>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>4</number_classes>
                    <average_number_members_per_class>25000</average_number_members_per_class>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="322487">
        <file>emd_7029.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>432</col>
            <row>432</row>
            <sec>432</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>432</x>
            <y>432</y>
            <z>432</z>
        </spacing>
        <cell>
            <a units="Å">528.336</a>
            <b units="Å">528.336</b>
            <c units="Å">528.336</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.056497645</minimum>
            <maximum>0.18061732</maximum>
            <average>0.00056291226</average>
            <std>0.009138624</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.223</x>
            <y units="Å">1.223</y>
            <z units="Å">1.223</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.032</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-7029::::</label>
        <annotation_details>Primary map</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>
