2019-12-11 REL RCSB RCSB RCSB 2017-09-01 2017-12-20 2017-12-20 2019-12-11 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01-GM094497, NSF-MCB- 1150288, DP2 EB020402-01, K99GM121880 United States Howard Hughes Medical Institute (HHMI) United States Department of Energy (DOE, United States) United States Negative stain reconstruction of the peroxisomal AAA-ATPase Pex1/Pex6 complex associated with substrate Pex15 Chowdhury S Gardner BM Castanzo DT Stjepanovic G Stefely MS Hurley JH Martin A Lander GC Gardner BM Castanzo DT Chowdhury S Stjepanovic G Stefely MS Hurley JH Lander GC Martin A The peroxisomal AAA-ATPase Pex1/Pex6 unfolds substrates by processive threading. Nat Commun UK 9 135 135 2018 29321502 doi:10.1038/s41467-017-02474-4 2041-1723 EMD-7005 associated EM volume Complex between Pex1-Pex6 AAA-ATPase with substrate Pex15 Complex between Pex1-Pex6 AAA-ATPase with substrate Pex15 0 Saccharomyces cerevisiae Escherichia coli BL21 0.75 singleParticle particle 7.6
60 mM HEPES pH 7.6, 50 mM NaCl, 50 mM KCl, 10 % glycerol, 10 mM MgCl2, 0.5 mM EDTA and 5mM ATP
 NEGATIVE Uranyl Formate Maxtaform COPPER/RHODIUM 400 CARBON GLOW DISCHARGE AIR FEI TECNAI SPIRIT FLOOD BEAM BRIGHT FIELD LAB6 120 2.2 0.5 1.5 52000.0 SIDE ENTRY, EUCENTRIC 298.15 TVIPS TEMCAM-F416 (4k x 4k) 4096 4096 15.6 1 1097 0.4 20.0 1
Difference of Gaussians (DoG)-based automated particle picker, implemented in Appion image processing software was used
102101 CTFFIND3 implemented in Appion
EMAN1 was used for phase flipping whole micrograph before particle extraction.
 EMD-6254
This map was low passed filtered to 60 Angstrom resolution.
 C1 23.2 FSC 0.143 CUT-OFF RELION 1.3 14678 PROJECTION MATCHING 78118 RELION 1.3 PROJECTION MATCHING RELION 1.3 emd_7005.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 0 0 0 80 80 80 328.0 328.0 328.0 90.0 90.0 90.0 X Y Z -8.168757 10.292679 -0.048110332 1.2685611 4.1 4.1 4.1 3.06 AUTHOR Negative stain reconstruction of the Pex15 bound Pex1-Pex6 complex.