2024-11-20 REL PDBj PDBj PDBj 2018-05-31 2018-10-10 2018-10-10 2024-11-20 Structure of the Herpes simplex virus type 2 C-capsid with capsid-vertex-specific component Wang JL Yuan S Herpes simplex virus 2, capsid, capsid-vertex-specific component, STRUCTURAL PROTEIN Wang J Yuan S Zhu D Tang H Wang N Chen W Gao Q Li Y Wang J Liu H Zhang X Rao Z Wang X Structure of the herpes simplex virus type 2 C-capsid with capsid-vertex-specific component. Nat Commun UK 9 3668 3668 2018 30201968 doi:10.1038/s41467-018-06078-4 2041-1723 5zz8 FULLOVERLAP Human herpesvirus 2 Human herpesvirus 2 0 1 2 3 4 5 6 7 Human herpesvirus 2 VIRION STRAIN false true VP19C Human herpesvirus 2 0.050566648 5 Chlorocebus sabaeus LEVO MKTKPLPTAPMAWAESAVETTTSPRELAGHAPLRRVLRPPIARRDGPVLLGDRAPRRTASTMWLLGIDPAESSPGTRATR DDTEQAVDKILRGARRAGGLTVPGAPRYHLTRQVTLTDLCQPNAERAGALLLALRHPTDLPHLARHRAPPGRQTERLAEA WGQLLEASALGSGRAESGCARAGLVSFNFLVAACAAAYDARDAAEAVRAHITTNYGGTRAGARLDRFSECLRAMVHTHVF PHEVMRFFGGLVSWVTQDELASVTAVCSGPQEATHTGHPGRPRSAVTIPACAFVDLDAELCLGGPGAAFLYLVFTYRQCR DQELCCVYVVKSQLPPRGLEAALERLFGRLRITNTIHGAEDMTPPPPNRNVDFPLAVLAASSQSPRCSASQVTNPQFVDR LYRWQPDLRGRPTARTCTYAAFAELGVMPDDSPRCLHRTERFGAVGVPVVILEGVVWRPGGWRACA G9I260 VP23 Human herpesvirus 2 0.034373785000000004 10 Chlorocebus sabaeus LEVO MITDCFEADIAIPSGISRPDAAALQRCEGRVVFLPTIRRQLALADVAHESFVSGGVSPDTLGLLLAYRRRFPAVITRVLP TRIVACPVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTLRFPVPLPTPLAREIVARLVARGI RDLNPDPRTPGELPDLNVLYYNGARLSLVADVQQLASVNTELRSLVLNMVYSITEGTTLILTLIPRLLALSAQDGYVNAL LQMQSVTREAAQLIHPEAPMLMQDGERRLPLYEALVAWLAHAGQLGDILALAPAVRVCTFDGAAVVQSGDMAPVIRYP P89441 Major capsid protein Human herpesvirus 2 0.14938437499999999 16 Chlorocebus sabaeus LEVO MAAPARDPPGYRYAAAMVPTGSILSTIEVASHRRLFDFFARVRSDENSLYDVEFDALLGSYCNTLSLVRFLELGLSVACV CTKFPELAYMNEGRVQFEVHQPLIARDGPHPVEQPVHNYMTKVIDRRALNAAFSLATEAIALLTGEALDGTGISLHRQLR AIQQLARNVQAVLGAFERGTADQMLHVLLEKAPPLALLLPMQRYLDNGRLATRVARATLVAELKRSFCDTSFFLGKAGHR REAIEAWLVDLTTATQPSVAVPRLTHADTRGRPVDGVLVTTAAIKQRLLQSFLKVEDTEADVPVTYGEMVLNGANLVTAL VMGKAVRSLDDVGRHLLEMQEEQLEANRETLDELESAPQTTRVRADLVAIGDRLVFLEALEKRIYAATNVPYPLVGAMDL TFVLPLGLFNPAMERFAAHAGDLVPAPGHPEPRAFPPRQLFFWGKDHQVLRLSMENAVGTVCHPSLMNIDAAVGGVNHDP VEAANPYGAYVAAPAGPGADMQQRFLNAWRQRLAHGRVRWVAECQMTAEQFMQPDNANLALELHPAFDFFAGVADVELPG GEVPPAGPGAIQATWRVVNGNLPLALCPVAFRDARGLELGVGRHAMAPATIAAVRGAFEDRSYPAVFYLLQAAIHGSEHV FCALARLVTQCITSYWNNTRCAAFVNDYSLVSYIVTYLGGDLPEECMAVYRDLVAHVEALAQLVDDFTLPGPELGGQAQA ELNHLMRDPALLPPLVWDCDGLMRHAALDRHRDCRIDAGGHEPVYAAACNVATADFNRNDGRLLHNTQARAADAADDRPH RPADWTVHHKIYYYVLVPAFSRGRCCTAGVRFDRVYATLQNMVVPEIAPGEECPSDPVTDPAHPLHPANLVANTVNAMFH NGRVVVDGPAMLTLQVLAHNMAERTTALLCSAAPDAGANTASTANMRIFDGALHAGVLLMAPQHLDHTIQNGEYFYVLPV HALFAGADHVANAPNFPPALRDLARHVPLVPPALGANYFSSIRQPVVQHARESAAGENALTYALMAGYFKMSPVALYHQL KTGLHPGFGFTVVRQDRFVTENVLFSERASEAYFLGQLQVARHETGGGVNFTLTQPRGNVDLGVGYTAVAATATVRNPVT DMGNLPQNFYLGRGAPPLLDNAAAVYLRNAVVAGNRLGPAQPLPVFGCAQVPRRAGMDHGQDAVCEFIATPVATDINYFR RPCNPRGRAAGGVYAGDKEGDVIALMYDHGQSDPARPFAATANPWASQRFSYGDLLYNGAYHLNGASPVLSPCFKFFTAA DITAKHRCLERLIVETGSAVSTATAASDVQFKRPPGCRELVEDPCGLFQEAYPITCASDPALLRSARDGEAHARETHFTQ YLIYDASPLKGLSL A0A0E3U2U0 VP26 Human herpesvirus 2 0.012147707 15 Chlorocebus sabaeus LEVO MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFA GDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP P89458 UL17 Human herpesvirus 2 0.07474780499999999 1 Chlorocebus sabaeus LEVO MNAHFANEVQYDLTRDPSSPASLIHVIISSECLAAAGVPLSALVRGRPDGGAAANFRVETQTRAHATGDCTPWRSAFAAY VPADAVGAILAPVIPAHPDLLPRVPSAGGLFVSLPVACDAQGVYDPYTVAALRLAWGPWATCARVLLFSYDELVPPNTRY AADGARLMRLCRHFCRYVARLGAAAPAAATEAAAHLSLGMGESGTPTPQASSVSGGAGPAVVGTPDPPISPEEQLTAPGG DTATAEDVSITQENEEILALVQRAVQDVTRRHPVRARPKHAASGVASGLRQGALVHQAVSGGALGASDAEAVLAGLEPPG GGRFATPGGPRAAGEDVLNDVLTLVPGTAKPRSLVEWLDRGWEALAGGDRPDWLWSRRSISVVLRHHYGTKQRFVVVSYE NSVAWGGRRARPPRLSSELATALTEACAAERVVRPHQLSPAAQTALLRRFPALEGPLRHPRPVLQPFDIAAEVAFVARIQ IACLRALGHSIRAALQGGPRIFQRLRYDFGPHQSEWLGEVTRRFPVLLENLMRALEGTAPDAFFHTAYALAVLAHLGGQG GRGRRRRLVPLSDDIPARFADSDAHYAFDYYSTSGDTLRLTNRPIAVVIDGDVNGREQSKCRFMEGSPSTAPHRVCEQYL PGESYAYLCLGFNRRLCGLVVFPGGFAFTINTAAYLSLADPVARAVGLRFCRGAATGPGLVR G9I238 UL25 Human herpesvirus 2 0.063623836 2 Chlorocebus sabaeus LEVO MDPYYPFDALDVWEHRRFIVADSRSFITPEFPRDFWMLPVFNIPRETAAERAAVLQAQRTAAAAALENAALQAAELPVDI ERRIRPIEQQVHHIADALEALETAAAAAEEADAARDAEARGEGAADGAAPSPTAGPAAAEMEVQIVRNDPPLRYDTNLPV DLLHMVYAGRGAAGSSGVVFGTWYRTIQERTIADFPLTTRSADFRDGRMSKTFMTALVLSLQSCGRLYVGQRHYSAFECA VLCLYLLYRTTHESSPDRDRAPVAFGDLLARLPRYLARLAAVIGDESGRPQYRYRDDKLPKAQFAAAGGRYEHGALATHV VIATLVRHGVLPAAPGDVPRDTSTRVNPDDVAHRDDVNRAAAAFLARGHNLFLWEDQTLLRATANTITALAVLRRLLANG NVYADRLDNRLQLGMLIPGAVPAEAIARGASGLDSGAIKSGDNNLEALCVNYVLPLYQADPTVELTQLFPGLAALCLDAQ AGRPLASTRRVVDMSSGARQAALVRLTALELINRTRTNTTPVGEIINAHDALGIQYEQGLGLLAQQARIGLASNAKRFAT FNVGSDYDLLYFLCLGFIPQYLSVA D6PUY5 UL36 Human herpesvirus 2 0.330616156 2 Chlorocebus sabaeus LEVO MIPAALPHPTMKRQGDRDIVVTGVRNQFATDLEPGGSVSCMRSSLSFLSLLFDVGPRDVLSAEAIEGCLVEGGEWTRAAA GSGPPRMCSIIELPNFLEYPAARGGLRCVFSRVYGEVGFFGEPTAGLLETQCPAHTFFAGPWAMRPLSYTLLTIGPLGMG LYRDGDTAYLFDPHGLPAGTPAFIAKVRAGDVYPYLTYYAHDRPKVRWAGAMVFFVPSGPGAVAPADLTAAALHLYGASE TYLQDEPFVERRVAITHPLRGEIGGLGALFVGVVPRGDGEGSGPVVPALPAPTHVQTPRADRPPEAPRGASGPPDTPQAG HPNRPPDDVWAAALEGTPPAKPSAPDAAASGPPHAAPPPQTPAGDAAEEAEDLRVLEVGAVPVGRHRARYSTGLPKRRRP TWTPPSSVEDLTSGERPAPKAPPAKAKKKSAPKKKAPVAAEVPASSPTPIAATVPPAPDTPPQSGQGGGDDGPASPSSPS VLETLGARRPPEPPGADLAQLFEVHPNVAATAVRLAARDAALAREVAACSQLTINALRSPYPAHPGLLELCVIFFFERVL AFLIENGARTHTQAGVAGPAAALLDFTLRMLPRKTAVGDFLASTRMSLADVAAHRPLIQHLLDENSQIGRLALAKLVLVA RDVIRETDAFYGDLADLDLQLRAAPPANLYARLGEWLLERSRAHPNTLFAPATPTHPEPLLHRIQALAQFARGEEMRVEA EAREMREALDALARGVDSVSQRAGPLTVMPVPAAPGAGGRAPCPPALGPEAIQARLEDVRIQARRAIESAIKEYFHRGAV YSAKALQASDSHDCRFHVASAAVVPMVQLLESLPAFDQHTRDVAQRAALPPPPPLATSPQAILLRDLLQRGQTLDAPEDL AAWLSVLTDAATQGLIERKPLEELARSIHGINDQQARRSSGLAELQRFDALDAALAQQLDSDAAFVPATGPAPYVDGGGL SPEATRMAEDALRQARAMEAAKMTAELAPEARSRLRERAHALEAMLNDARERAKVAHDAREKFLHKLQGVLRPLPDFVGL KACPAVLATLRASLPAGWTDLADAVRGPPPEVTAALRADLWGLLGQYREALEHPTPDTATALAGLHPAFVVVLKTLFADA PETPVLVQFFSDHAPTIAKAVSNAINAGSAAVATASPAATVDAAVRAHGALADAVSALGAAARDPASPLSFLAALADSAA GYVKATRLALEARGAIDELTTLGSAAADLVVQARRACAQPEGDHAALIDAAARATTAARESLAGHEAGFGGLLHAEGTAG DHSPSGRALQELGKVIGATRRRADELEAAVADLTAKMAAQRARGSSERWAAGVEAALDRVENRAEFDVVELRRLQALAGT HGYNPRDFRKRAEQALAANAEAVTLALDTAFAFNPYTPENQRHPMLPPLAAIHRLGWSAAFHAAAETYADMFRVDAEPLA RLLRIAEGLLEMAQAGDGFIDYHEAVGRLADDMTSVPGLRRYVPFFQHGYADYVELRDRLDAIRADVHRALGGVPLDLAA AAEQISAARNDPEATAELVRTGVTLPCPSEDALVACAAALERVDQSPVKNTAYAEYVAFVTRQDTAETKDAVVRAKQQRA EATERVMAGLREALAARERRAQIEAEGLANLKTMLKVVAVPATVAKTLDQARSVAEIADQVEVLLDQTEKTRELDVPAVI WLEHAQRTFETHPLSAARGDGPGPLARHAGRLGALFDTRRRVDALRRSLEEAEAEWDEVWGRFGRVRGGAWKSPEGFRAM HEQLRALQDTTNTVSGLRAQPAYERLSARYQGVLGAKGAERAEAVEELGARVTKHTALCARLRDEVVRRVPWEMNFDALG RLLAEFDAAAADLAPWAVEEFRGARELIQYRMGLYSAYARAGGQTGAGAESAPAPLLVDLRALDARARASSSPEGHEVDP QLLRRRGEAYLRAGGDPGPLVLREAVSALDLPFATSFLAPDGTPLQYALCFPAVTDKLGALLMRPEAACVRPPLPTDVLE SAPTVTAMYVLTVVNRLQLALSDAQAANFQLFGRFVRHRQATWGASMDAAAELYVALVATTLTREFGCRWAQLGWASGAA APRPPPGPRGSQRHCVAFNENDVLVALVAGVPEHIYNFWRLDLVRQHEYMHLTLERAFEDAAESMLFIQRLTPHPDARIR VLPTFLDGGPPTRGLLFGTRLADWRRGKLSETDPLAPWRSALELGTQRRDAPALGKLSPAQALAAVSVLGRMCLPSAALA ALWTCMFPDDYTEYDSFDALLAARLESGQTLGPAGGREASLPEAPHALYRPTGQHVAVLAAATHRTPAARVTAMDLVLAA VLLGAPVVVALRNTTAFSRESELELCLTLFDSRPGGPDAALRDVVSSDIETWAVGLLHTDLNPIENACLAAQLPRLSALI AERPLADGPPCLVLVDISMTPVAVLWEAPEPPGPPDVRFVGSEATEELPFVATAGDVLAASAADADPFFARAILGRPFDA SLLTGELFPGHPVYQRPLADEAGPSAPTAARDPRDLAGGDGGSGPEDPAAPPARQADPGVLAPTLLTDATTGEPVPPRMW AWIHGLEELASDDAGGPTPNPAPALLPPPATDQSVPTSQYAPRPIGPAATARETRPSVPPQQNTGRVPVAPRDDPRPSPP TPSPPADAALPPPAFSGSAAAFSAAVPRVRRSRRTRAKSRAPRASAPPEGWRPPALPAPVAPVAASARPPDQPPTPESAP PAWVSALPLPPGPASARGAFPAPTLAPIPPPPAEGAVVPGGDRRRGRRQTTAGPSPTPPRGPAAGPPRRLTRPAVASLSA SLNSLPSPRDPADHAAAVSAAAAAVPPSPGLAPPTSAVQTSPPPLAPGPVAPSEPLCGWVVPGGPVARRPPPQSPATKPA ARTRIRARSVPQPPLPQPPLPQPPLPQPPLPQPPLPQPPLPQPPLPQPPLPQPPLPQPPLPQPPLPPVTRTLTPQSRDSV PTPESPTHTNTHLPVSAVTSWASSLALHVDSAPPPASLLQTLHISSDDEHSDADSLRFSDSDDTEALDPLPPEPHLPPAD EPPGPLAADHLQSPHSQFGPLPVQANAVLSRRYVRSTGRSALAVLIRACRRIQQQLQRTRRALFQRSNAVLTSLHHVRML LG A0A1U9ZLV0 singleParticle particle 7.4 ETHANE FEI TITAN KRIOS FLOOD BEAM OTHER FIELD EMISSION GUN 300 GATAN K2 QUANTUM (4k x 4k) 30.0 1 C1 3.75 FSC 0.143 CUT-OFF 56901 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_6976.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1200 1200 1200 0 0 0 1200 1200 1200 1656.0 1656.0 1656.0 90.0 90.0 90.0 X Y Z -9.663976 16.874480999999999 0.00823836 0.7387605 1.38 1.38 1.38 1.0 AUTHOR full_map