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    <admin>
        <current_status>
            <date>2019-06-12</date>
            <code>REL</code>
            <processing_site>PDBj</processing_site>
        </current_status>
        <sites>
            <deposition>PDBj</deposition>
            <last_processing>PDBj</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-02-22</deposition>
            <header_release>2018-11-28</header_release>
            <map_release>2018-11-28</map_release>
            <update>2019-06-12</update>
        </key_dates>
        <title>Serial cryotomogram of a metaphase budding yeast cell.</title>
        <authors_list>
            <author>Ng C</author>
            <author>Deng L</author>
            <author>Chen C</author>
            <author>Lim H</author>
            <author>Shi J</author>
            <author>Surana U</author>
            <author>Gan L</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Ng CT</author>
                    <author order="2">Deng L</author>
                    <author order="3">Chen C</author>
                    <author order="4">Lim HH</author>
                    <author order="5">Shi J</author>
                    <author order="6">Surana U</author>
                    <author order="7">Gan L</author>
                    <title>Electron cryotomography analysis of Dam1C/DASH at the kinetochore-spindle interface in situ.</title>
                    <journal_abbreviation>J.Cell Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>218</volume>
                    <first_page>455</first_page>
                    <last_page>473</last_page>
                    <year>2019</year>
                    <external_references type="PUBMED">30504246</external_references>
                    <external_references type="DOI">doi:10.1083/jcb.201809088</external_references>
                    <external_references type="ISSN">1540-8140</external_references>
                    <external_references type="CSD">2019</external_references>
                    <external_references type="ASTM">JCLBA3</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-6914</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>S. cerevisiae cell, arrested in metaphase</name>
        <supramolecule_list>
            <cell_supramolecule supramolecule_id="1">
                <name>S. cerevisiae cell, arrested in metaphase</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="4932">Saccharomyces cerevisiae</organism>
                    <strain>W303</strain>
                </natural_source>
            </cell_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>tomography</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <tomography_preparation preparation_id="1">
                    <buffer>
                        <ph>7.0</ph>
                        <details>YEPD</details>
                    </buffer>
                    <grid>
                        <model>C-flat-2/0.5 4C</model>
                        <material>COPPER</material>
                        <mesh>150</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>PLASMA CLEANING</type>
                            <atmosphere>AIR</atmosphere>
                        </pretreatment>
                        <details>plasma cleaned at 15 mA for 45 seconds, carbon side pre-coated with BSA-Gold mixture</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <details></details>
                    </vitrification>
                    <fiducial_markers_list>
                        <fiducial_marker>
                            <manufacturer>BBI</manufacturer>
                            <diameter units="nanometer">10</diameter>
                        </fiducial_marker>
                    </fiducial_markers_list>
                    <high_pressure_freezing>
                        <instrument>OTHER</instrument>
                        <details>Self-pressurized freezing. The value given for _emd_high_pressure_freezing.instrument is Vitrobot cup. This is not in a list of allowed values set(['LEICA EM PACT2', 'LEICA EM PACT', 'EMS-002 RAPID IMMERSION FREEZER', 'OTHER', 'LEICA EM HPM100', 'BAL-TEC HPM 010']) so OTHER is written into the XML file.</details>
                    </high_pressure_freezing>
                    <cryo_protectant>25% dextran</cryo_protectant>
                    <sectioning>
                        <ultramicrotomy>
                            <instrument>Leica UC7/FC7</instrument>
                            <temperature units="K">123</temperature>
                            <final_thickness units="nm">100</final_thickness>
                        </ultramicrotomy>
                    </sectioning>
                </tomography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <tomography_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.7</nominal_cs>
                    <nominal_defocus_min units="µm">10.0</nominal_defocus_min>
                    <nominal_magnification>8700.</nominal_magnification>
                    <calibrated_magnification>15678.</calibrated_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <basic/>
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <detector_mode>INTEGRATING</detector_mode>
                            <digitization_details>
                                <dimensions>
                                    <width units="pixel">4096</width>
                                    <height units="pixel">4096</height>
                                </dimensions>
                                <sampling_interval units="µm">14.0</sampling_interval>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>61</number_real_images>
                            <average_exposure_time units="s">1.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">1.6</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </tomography_microscopy>
            </microscopy_list>
            <tomography_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <algorithm>BACK PROJECTION</algorithm>
                    <software_list>
                        <software>
                            <name>IMOD</name>
                            <version>4.10</version>
                        </software>
                    </software_list>
                    <number_images_used>61</number_images_used>
                </final_reconstruction>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>eTomo</name>
                            <version>4.10</version>
                        </software>
                    </software_list>
                    <details>Phase flipping done in Etomo 4.10</details>
                </ctf_correction>
            </tomography_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_6914.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS SIGNED BYTE</data_type>
        <dimensions>
            <col>3268</col>
            <row>4334</row>
            <sec>867</sec>
        </dimensions>
        <origin>
            <col>-1239</col>
            <row>-184</row>
            <sec>102</sec>
        </origin>
        <spacing>
            <x>3268</x>
            <y>4334</y>
            <z>867</z>
        </spacing>
        <cell>
            <a units="Å">29183.24</a>
            <b units="Å">38702.62</b>
            <c units="Å">7742.31</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-128.0</minimum>
            <maximum>127.0</maximum>
            <average>-16.042185</average>
            <std>10.322338999999999</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">8.93</x>
            <y units="Å">8.93</y>
            <z units="Å">8.93</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-6914::::</label>
        <annotation_details>Serial cryotomogram of a metaphase budding yeast cell</annotation_details>
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