Cryo-EM structure of Methanoccus maripaludis archaellum

2024-03-27 REL PDBj PDBj PDBj 2017-12-26 2019-02-13 2019-02-13 2024-03-27 JSPS Kakenhi 17K17085 Japan SPRING8 Proposal No. 2014B1341 Japan Cryo-EM structure of Methanoccus maripaludis archaellum Meshcheryakov VA Shibata S Schreiber MT Villar-Briones A Jarrell KF Aizawa S Wolf M Wolf M Kurumizaka H Archaellum, archea, flagellum, metal binding, motility, helical, PROTEIN FIBRIL Meshcheryakov VA Shibata S Schreiber MT Villar-Briones A Jarrell KF Aizawa SI Wolf M High-resolution archaellum structure reveals a conserved metal-binding site. Embo Rep. UK 20 2019 30898768 doi:10.15252/embr.201846340 1469-3178 5z1l FULLOVERLAP M.maripaludis archaellin FlaB1 filament M.maripaludis archaellin FlaB1 filament 0 1 Methanococcus maripaludis S2 Flagellin Methanococcus maripaludis (strain S2 / LL) S2 / LL 0.021639359 18 LEVO MKITEFMKSKKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKASTTGKESTEQVASGLLINGITGSVGTSDVKLLA IYLAPNAGSSAIDLAQTKVMLDYNGKSVVLGYGGNQDMSSGNSSVFSNDTGATATTFQVNILQDYDDSAVDNAVINKGDA VALIVDVNASFAGEIPERTAISGKVQPEFGAPGVISFTTPASYTTTLVELQ Q6LWP3 helical particle .8 7.0 H2O Water Quantifoil R1.2/1.3 COPPER 200 CARBON HOLEY 100.0 PLASMA CLEANING 15 OTHER 9.33

Gatan Solarus

ETHANE 100 289 FEI VITROBOT MARK IV

3 second blot, 3.5uL.

sample was monodisperse

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 -1.5 -1.5 -2.5 -2.5 105000.0 47619.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 77.0 100.0 0.1 GIF Quantum LS 0 20

nanoprobe, parallel beam illumination

GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 7676 7420 1-48 1 2000 12.0 96.0 1

frame alignment and integration with motioncor2 incl. dose weighting and 2x Fourier cropping

100 FOURIER SPACE 4.0 FSC 0.143 CUT-OFF SPRING 0.84 110747 110747 EMAN2 2.1 e2helixboxer.py PROJECTION MATCHING SPRING 0.84

segmentrefine3d

emd_6876.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 -64 -64 -64 128 128 128 180.48 180.48 180.48 90.0 90.0 90.0 X Y Z -11.208774 14.403278999999999 -0.000000002624336 0.9999997 1.41 1.41 1.41 3.0 AUTHOR ::::EMDATABANK.org::::EMD-6876:::: Methanococcus maripaludis archaellum cryo-EM reconstruction FLEXIBLE FIT REAL